Publications by authors named "Nicole A Caimi"

Article Synopsis
  • Bacteria found in bats produce valuable secondary metabolites and show significant genomic diversity based on the species of bat and cave location they inhabit.
  • A study analyzed the genomes of 132 bacterial isolates from 11 species of insectivorous bats across six cave sites in Arizona and New Mexico, revealing that bacterial isolates from the same bat species or cave had higher genomic similarity.
  • Despite the ecological influence on genomic similarity, the distribution of biosynthetic gene clusters (BGCs) was not limited to specific bat species or sites, highlighting the rich diversity of BGCs present across various bat species which could inform future natural product research.
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Polyketide synthases (PKSs) are multidomain enzymes in microorganisms that synthesize complex, bioactive molecules. PKS II systems are iterative, containing only a single representative of each domain: ketosynthase alpha (KS[Formula: see text]), ketosynthase beta and the acyl carrier protein. Any gene encoding for one of these domains is representative of an entire PKS II biosynthetic gene cluster (BGC).

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Background: Antibiotic-producing Streptomyces bacteria are ubiquitous in nature, yet most studies of its diversity have focused on free-living strains inhabiting diverse soil environments and those in symbiotic relationship with invertebrates.

Results: We studied the draft genomes of 73 Streptomyces isolates sampled from the skin (wing and tail membranes) and fur surfaces of bats collected in Arizona and New Mexico. We uncovered large genomic variation and biosynthetic potential, even among closely related strains.

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A putative novel clade within the genus Streptomyces was discovered following antifungal screening against Pseudogymnoascus destructans, the causative agent of white-nose syndrome, and described using multi-locus sequencing analysis. Swabs from both the cave myotis bat (Myotis velifer) and the Brazilian free-tailed bat (Tadarida brasiliensis) in southern New Mexico bore isolates AC536, AC541 and AC563, which were characterised using phylogenetic, morphological, and phenotypic analyses. Multi-locus sequence analysis positions AC541 with neighbors Streptomyces rubidus (NRRL B-24619), Streptomyces guanduensis (NRRL B-24617), and Streptomyces yeochonensis (NRRL B-24245).

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Four bacterial strains, with the capability of inhibiting Pseudogymnoascus destructans, the causative agent of white-nose syndrome, were isolated from male Townsend's big-eared bats (Corynorhinus townsendii, Family: Vespertilionidae) in New Mexico. Isolates AC161, AC162, AC208, and AC230 were characterised as a novel clade using morphological, phenotypic and phylogenetic analysis. A draft genome of the type strain was completed to determine its taxonomy and secondary metabolite biosynthetic potential.

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At least two-thirds of commercial antibiotics today are derived from , more specifically from the genus Antibiotic resistance and new emerging diseases pose great challenges in the field of microbiology. Cave systems, in which actinobacteria are ubiquitous and abundant, represent new opportunities for the discovery of novel bacterial species and the study of their interactions with emergent pathogens. White-nose syndrome is an invasive bat disease caused by the fungus , which has killed more than six million bats in the last 7 years.

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