Publications by authors named "Nicholas J MacKnight"

Article Synopsis
  • Long-read sequencing technology is enhancing genome assembly methods for previously understudied organisms, like stony corals, with new genome assemblies becoming publicly available.
  • A new de-novo genome assembly for the endangered Caribbean star coral, Orbicella faveolata, significantly improved genome quality metrics compared to previous short-read methods, detecting 32,172 protein-coding genes.
  • This new genome resource aims to support conservation efforts for O. faveolata, especially as it faces threats from human activities and is increasingly used in reef restoration projects.
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Article Synopsis
  • * The study investigates how various coral species and their algal symbionts respond to SCTLD by analyzing gene expression profiles from a transmission experiment.
  • * Key findings show that SCTLD infection increases expression of specific genes linked to the breakdown of algal symbionts and that the disease's severity varies depending on the type of symbiotic algae present.
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Infectious diseases are an increasing threat to coral reefs, resulting in altered community structure and hindering the functional contributions of disease-susceptible species. We exposed seven reef-building coral species from the Caribbean to white plague disease and determined processes involved in (i) lesion progression, (ii) within-species gene expression plasticity, and (iii) expression-level adaptation among species that lead to differences in disease risk. Gene expression networks enriched in immune genes and cytoskeletal arrangement processes were correlated to lesion progression rates.

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Disease outbreaks have caused significant declines of keystone coral species. While forecasting disease outbreaks based on environmental factors has progressed, we still lack a comparative understanding of susceptibility among coral species that would help predict disease impacts on coral communities. The present study compared the phenotypic and microbial responses of seven Caribbean coral species with diverse life-history strategies after exposure to white plague disease.

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Historically mechanisms with which basal animals such as reef-building corals use to respond to changing and increasingly stressful environments have remained elusive. However, the increasing availability of genomic and transcriptomic data from these organisms has provided fundamental insights into the biology of these critically important ecosystem engineers. Notably, insights into cnidarians gained in the post-genomics age have revealed a surprisingly complex immune system which bears a surprising level of similarity with the vertebrate innate immune system.

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