Publications by authors named "Niazi M"

Industrialization and population explosion are ultimately affecting freshwater resources. Bahawalpur is a rapidly growing city in Pakistan where groundwater is the major source of drinking water. However, groundwater is also being contaminated due to various anthropogenic sources.

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Background: Pomegranate supplementation has been shown to reduce oxidative stress and inflammation, with some evidence suggesting it may accelerate recovery from exercise-induced muscle damage (EIMD), including metabolic, mechanical, and neuromuscular recovery.

Objectives: This systematic review and meta-analysis aimed to investigate the effects of pomegranate supplementation on markers of EIMD.

Methods: A systematic search of Scopus, PubMed, and Web of Science up to January 2024 identified studies evaluating pomegranate supplementation and exercise recovery.

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Background And Purpose: Diastasis Recti Abdominis (DRA) is a separation of the rectus abdominis muscles which often results from pregnancy. This meta-analysis aims to identify the most effective non-surgical treatment to reduce post-partum DRA.

Methods: A comprehensive search was performed on electronic databases including PubMed, Cochrane, and Embase databases for RCTs involving abdominal or pelvic muscle exercises, and abdominal binding for DRA Reduction.

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Aim: Estrogen receptors (ERs), ERα and ERβ, are frequently detected in lung cancers, yet their prognostic impact on non-small cell lung cancer (NSCLC) outcomes remains uncertain. This study aims to assess the pooled prevalence and prognostic significance of ERα and ERβ in NSCLC, with a focus on gender differences.

Methods: We performed a systematic review and meta-analysis, identifying studies from major databases, including PubMed, Cochrane Library, and Embase, that reported ERα and ERβ expression and survival outcomes in NSCLC.

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Background: Despite induced abortion being highly legally restricted in Pakistan, studies in 2002 and 2012 showed that many women rely on abortion when faced with an unintended pregnancy. Following the 2012 study, concerted efforts were made to improve contraceptive services and to strengthen postabortion care. The availability and use of misoprostol also expanded in the past decade.

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Background: Despite the availability of tetanus-diphtheria (TD) vaccines in Iran, the seroconversion rate of these products as a booster dose is unknown.

Objectives: This study evaluates the seroconversion rate of the Iranian Td vaccine in adults who have not been vaccinated in the past decade.

Methods: In this study, 20 adult volunteers aged 18 to 60 who had not received the Td vaccine in the past decade received a booster dose of the Iranian Td vaccine.

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Background & Aims: A common genetic variant (rs738409) encoding isoleucine to methionine at position 148 in the PNPLA3 protein is a determinant of hepatic steatosis, inflammation, fibrosis, cirrhosis, and liver-related mortality. AZD2693 is a liver-targeted antisense oligonucleotide against PNPLA3 mRNA. We evaluated the safety, tolerability, pharmacokinetics, and pharmacodynamics in single ascending dose (SAD) and multiple ascending dose (MAD) studies.

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Within the aging cortex, amyloid beta peptide (Aβ) is a crucial element of the senile plaques, a hallmark feature often observed in cases of Alzheimer's disease (AD). The UPR (unfolded protein response), a cellular mechanism for protein folding, is switched on by Aβ accumulation. Endoplasmic reticulum (ER) stress has been identified as playing a role in aging and the development of neurodegenerative diseases.

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Breast cancer, a widespread and life-threatening disease, necessitates precise diagnostic tools for improved patient outcomes. Tumor-Infiltrating Lymphocytes (TILs), reflective of the immune response against cancer cells, are pivotal in understanding breast cancer behavior. However, inter-observer variability in TILs scoring methods poses challenges to reliable assessments.

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Background: Metabolic syndrome (MetS) contributes to an increased risk of cardiovascular diseases. Traditional metrics like body mass index (BMI) have limitations in discerning fat distribution. The purpose of this study was to evaluate the diagnostic accuracy of traditional and novel anthropometric indices in metabolic syndrome and its components in the south coast of Iran.

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In this study, we used a three-dimensional airway "organ tissue equivalent" (OTE) model at an air-liquid interface (ALI) to mimic human airways. We investigated the effects of three viruses (Influenza A virus (IAV), Human metapneumovirus (MPV), and Parainfluenza virus type 3 (PIV3) on this model, incorporating various control conditions for data integrity. Our primary objective was to assess gene expression using the NanoString platform in OTE models infected with these viruses at 24- and 72-hour intervals, focusing on 773 specific genes.

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The procedure for disposing of textile waste sludge requires sustainable solutions due to numerous environmental issues associated with its disposal. The majority of textile manufacturers incinerate the waste sludge to meet their heating demands, which is harmful to the environment. It can also be used in soil amendment, biodegradable products, construction material and water treatment process as absorbent to remove the heavy metals etc.

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Background: Underlying intracranial stenosis is the most common cause of failed mechanical thrombectomy in patients with acute ischemic stroke with large vessel occlusion. Adjunct emergent stenting is sometimes performed to improve or maintain reperfusion, despite limited data regarding its safety or efficacy.

Methods: We conducted a prospective multicenter observational international cohort study.

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Background: Mentoring plays a pivotal role in mentees' professional advancement. However, the factors that affect career progression in informal mentoring relationships, especially with respect to faculty members, have not been extensively explored. This study aimed to explore the factors that affect career progression in informal faculty mentorings within mentor and mentee relationships.

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Accurate recurrence risk stratification is crucial for optimizing treatment plans for breast cancer patients. Current prognostic tools like Oncotype DX (ODX) offer valuable genomic insights for HR+/HER2- patients but are limited by cost and accessibility, particularly in underserved populations. In this study, we present Deep-BCR-Auto, a deep learning-based computational pathology approach that predicts breast cancer recurrence risk from routine H&E-stained whole slide images (WSIs).

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Article Synopsis
  • The study investigates how various factors affect the immune function of dairy cattle's white blood cells (PMN), especially their ability to engulf pathogens (phagocytosis) and produce reactive oxygen species (oxidative burst) using blood samples from Holstein heifers.
  • Blood samples were collected in tubes with different anticoagulants (ACD vs. EDTA) and stored at a cool temperature for varying lengths of time to analyze PMN viability and functionality.
  • Results showed that while PMN viability dropped significantly after 6 hours of storage for both anticoagulant types, there was no notable difference in PMN function (phagocytosis and oxidative burst) between the two anticoagulants or across the different storage times. *
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Introduction: This study introduces the Supervised Magnitude-Altitude Scoring (SMAS) methodology, a novel machine learning-based approach for analyzing gene expression data from non-human primates (NHPs) infected with Ebola virus (EBOV). By focusing on host-pathogen interactions, this research aims to enhance the understanding and identification of critical biomarkers for Ebola infection.

Methods: We utilized a comprehensive dataset of NanoString gene expression profiles from Ebola-infected NHPs.

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Article Synopsis
  • Lung cancer, particularly lung adenocarcinoma (LUAD), is the most common cause of cancer death in the U.S. and requires careful monitoring after surgical removal due to high recurrence risk.
  • Traditional methods of assessing tumor grading are labor-intensive and may vary between observers, leading to inconsistencies in treatment planning.
  • This study introduces a deep learning model with a dual-attention architecture that effectively predicts the 5-year recurrence risk of LUAD post-surgery, outperforming existing methods and enhancing decision-making in patient treatment.
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There is a paucity of data on the cardiovascular implications of monoclonal gammopathy of undetermined significance, especially among hospitalized patients. Our study aimed to investigate the association between MGUS and cardiovascular outcomes in a hospital setting using the National Inpatient Sample database. MGUS patients were sampled using ICD-10 codes.

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Although multiple instance learning (MIL) methods are widely used for automatic tumor detection on whole slide images (WSI), they suffer from the extreme class imbalance WSIs containing small tumors where the tumor may include only a few isolated cells. For early detection, it is important that MIL algorithms can identify small tumors. Existing studies have attempted to address this issue using attention-based architectures and instance selection-based methodologies but have not produced significant improvements.

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Article Synopsis
  • The study explores the relationship between rheumatoid arthritis (RA) and osteoporosis (OP) by identifying key genes and using bioinformatics to find potential drug repurposing opportunities.
  • Through network analysis, the top hub genes linked to both diseases were identified, including IL6, TNF, and STAT3, which play significant roles in inflammation.
  • A total of 16 drugs were suggested as candidates for repurposing, with specific drugs recommended for either OP or both RA and OP based on their impact on immune responses.
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Purpose: Oropharyngeal squamous cell cancers (OPSCCs) are traditionally managed with surgery and, if indicated, adjuvant radiation therapy (RT) with or without chemotherapy. NCCN recommends keeping the time from surgery to the start of RT (TSRT) within 6 weeks to avoid possibly compromising patient outcomes. HPV+ OPSCCs behave more favorably than HPV- OPSCCs.

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Article Synopsis
  • Primary renal lymphoma (PRL) is a rare form of non-Hodgkin's lymphoma affecting the kidneys without spreading to other areas.
  • A 66-year-old woman experienced shortness of breath and acute renal failure, leading to a diagnosis of primary renal diffuse large B-cell lymphoma after detailed imaging and a renal biopsy.
  • The patient was treated with R-CHOP chemotherapy, leading to a full recovery of kidney function and highlighting the need for prompt recognition and treatment of PRL to improve patient outcomes.
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Alveolar soft part sarcoma (ASPS) is a rare malignant tumor that manifests as a slow-growing soft tissue mass and frequently presents with distant metastasis. The prognosis is variable, and complete remission of metastatic disease has rarely been reported. Our patient was diagnosed with metastatic ASPS at the age of 17, with a primary forearm lesion and metastasis to the lungs.

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