Publications by authors named "Ngan T K Pham"

Article Synopsis
  • A study analyzed 1,625 stool samples from children with diarrhea in Japan over four years (2018-2022) to detect human astroviruses (HAstVs) and other diarrheal viruses, finding HAstV in 8.6% of samples.
  • The prevalence of HAstVs varied by year, with a notable increase to 20.1% in 2021-2022, and a significant infection rate was observed in children aged 1-3 years.
  • The study identified multiple HAstV genotypes, including outbreaks of HAstV1 and MLB2 during the COVID-19 pandemic, and noted for the first time a mixed infection of HAstV1 and MLB1.
View Article and Find Full Text PDF

Norovirus (NoV) genogroup II, polymerase type P31, capsid genotype 4, Sydney_2012 variant (GII.P31/GII.4_Sydney_2012) has been circulating at high levels for over a decade, raising the question of whether this strain is undergoing molecular alterations without demonstrating a substantial phylogenetic difference.

View Article and Find Full Text PDF

Amyloid β (Aβ) aggregates into two distinct fibril and amorphous forms in the brains of patients with Alzheimer's disease. Adenosine triphosphate (ATP) is a biological hydrotrope that causes Aβ to form amorphous aggregates and inhibit fibril formation at physiological concentrations. Based on diffracted X-ray blinking (DXB) analysis, the dynamics of Aβ significantly increased immediately after ATP was added compared to those in the absence and presence of ADP and AMP, and the effect diminished after 30 min as the aggregates formed.

View Article and Find Full Text PDF

Background: Acute gastroenteritis is one of the major causes of morbidity and mortality in young children worldwide. Among these, rotavirus, norovirus, and adenovirus have been reported as the primary viral pathogens associated with the disease. Rapid diagnosis of viral pathogens is crucial when diarrhea outbreaks occur to ensure the timely administration of appropriate treatment and control measures.

View Article and Find Full Text PDF
Article Synopsis
  • - Noroviruses (NoVs) cause significant outbreaks of acute gastroenteritis globally, and recent research indicates the emergence of new recombinant strains in various countries, including Japan.
  • - A study analyzed 1,175 stool samples from Japanese infants and children over three years, finding 355 cases positive for NoV, with a predominance of GII genotypes, especially GII.4.
  • - The research identified multiple genotypes and recombinant strains, highlighting a decrease in NoV infections among children during and after the COVID-19 pandemic, emphasizing the need for ongoing surveillance.
View Article and Find Full Text PDF

An increasing trend of sapovirus (SaV) infections in Japanese children during 2009-2019, particularly after the introduction of the voluntary rotavirus (RV)-vaccination program has been observed. Herein, we investigated the epidemiological situation of SaV infections from 2019 to 2022 when people adopted a precautionary lifestyle due to the emergence of the COVID-19 pandemic, and RV vaccines had been implemented as routine vaccines. Stool samples were collected from children who attended outpatient clinics with acute gastroenteritis and analyzed by reverse transcriptase-polymerase chain reaction to determine viral etiology.

View Article and Find Full Text PDF
Article Synopsis
  • * Raw sewage samples from Japan (2018-2022) showed a significant rise (10-20%) in AGE viruses such as rotavirus and norovirus during the pandemic, while some others saw small decreases.
  • * The research highlighted the emergence and increase of multiple viral strains during this period, emphasizing the need to monitor sewage water for a better understanding of ongoing viral activity when clinical data may be lacking.
View Article and Find Full Text PDF

Transforming growth factor-beta 1 (TGF-β1) is a pleiotropic growth factor playing various roles in the human body including cell growth and development. More functions of TGF-β1 have been discovered, especially its roles in viral infection. TGF-β1 is abundant at the maternal-fetal interface during pregnancy and plays an important function in immune tolerance, an essential key factor for pregnancy success.

View Article and Find Full Text PDF

The Zika virus (ZIKV) is well known for causing congenital Zika syndrome if the infection occurs during pregnancy; however, the mechanism by which the virus infects and crosses the placenta barrier has not been completely understood. In pregnancy, TGF-β1 is abundant at the maternal-fetal interface. TGF-β1 has been reported to enhance rubella virus binding and infection in human lung epithelial cells.

View Article and Find Full Text PDF
Article Synopsis
  • Rubella virus (RuV) infections during early pregnancy, particularly in the first trimester, can result in congenital rubella syndrome (CRS), although not all infections lead to this outcome, highlighting a gap in understanding the infection mechanisms.* -
  • The study explores how hypoglycemia-related endoplasmic reticulum (ER) stress might influence vertical RuV infection, using human trophoblast cells subjected to low or high glucose conditions before infection.* -
  • Results show that low-glucose-induced stress increased RuV infection and viral production in trophoblasts without significant cell death, indicating that early pregnancy low glucose levels may enhance susceptibility to RuV and contribute to CRS.*
View Article and Find Full Text PDF
Article Synopsis
  • Rotavirus A (RVA) is a leading cause of severe gastroenteritis in children globally, and Japan introduced two rotavirus vaccines in 2011 and 2012, which became part of their national program in 2020.
  • A study analyzed stool samples from children with gastroenteritis in Japan from 2014 to 2020 to investigate the prevalence and genetic diversity of RVA during the voluntary vaccination period.
  • Findings showed a decrease in RVA detection rates over time, coinciding with increased vaccination rates, and a yearly change in the distribution of RVA genotypes, highlighting the evolving nature of rotavirus strains.
View Article and Find Full Text PDF

We recently published an article about myelin oligodendrocyte glycoprotein-independent rubella infection of keratinocytes in vitro, in which first-trimester trophoblast cells were shown as rubella virus (RuV)-resistant. Given an incident rate as high as 90% of congenital rubella syndrome in the first eight weeks of pregnancy, the RuV infection of first-trimester trophoblasts is considered key to opening the gate to transplacental transmission mechanisms. Therefore, with this study, we aimed to verify the susceptibility/resistance of first-trimester trophoblast cell lines, HTR-8/SVneo and Swan.

View Article and Find Full Text PDF
Article Synopsis
  • Norovirus (NoV) is a leading cause of gastroenteritis, particularly in children under 5, but cases dropped significantly in Japan during the COVID-19 pandemic due to school closures.
  • In September 2021, an outbreak occurred in kindergartens and nurseries in Maizuru, Kyoto, where 26 stool samples tested positive for NoV GII, with most cases showing mild symptoms like vomiting.
  • The genomic analysis of the samples revealed mutations in the NoV GII.4 Sydney[P31] strain, highlighting the need for ongoing monitoring of NoV variants in Japan.
View Article and Find Full Text PDF
Article Synopsis
  • * Researchers sequenced the complete RNA coding segments of a rare G9P[4] RVA strain found in a child's feces in Japan.
  • * The genomic profile of this strain, identified as G9-P[4]-I2-R2-C2-M2-A2-N2-T2-E2-H2, reveals it contains DS-1-like genotype 2 genes and was isolated in 2013.
View Article and Find Full Text PDF

Background: Acute gastroenteritis is the most common cause of illness and death in infants and young children worldwide. Rotaviruses (RVs) are the major viruses that cause acute gastroenteritis in young children, especially in developing countries in Asia and Africa.

Methods: The presence of rotavirus antigens in sera of four unvaccinated pediatric patients, aged between 4 and 6 years with severe diarrhea and dehydration, were detected by using three immunochromatographic (IC) kits.

View Article and Find Full Text PDF

Although two live oral rotavirus (RV) vaccines, Rotarix and RotaTeq, play a critical role toward reducing disease severity, hospitalization, and death rate in RV infections, regular monitoring of vaccine effectiveness (VE) is yet necessary because the segmented genome structure and reassortment capability of RVs pose considerable threats toward waning VE. In this study, we examined the VE by a test-negative study design against G9P[8]I2 strain during a seasonal outbreak in February-May, 2018, in an outpatient clinic in Kyoto Prefecture, Japan. It remains important because G9P[8]I2 strain remains partially heterotypic to these vaccines and predominating in post-vaccination era.

View Article and Find Full Text PDF

Virus-host cell interactions in rubella virus (RuV) are of great interest in current research in the field, as their mechanism is not yet well understood. By hypothesizing that the epithelial-to-mesenchymal transition (EMT) may play a role in RuV infection, this study aimed to investigate the influence of TGF-β1-induced EMT of human lung epithelial A549 cells on the infectivity of RuV. A549 cells were cultured and treated with TGF-β1 for 1 to 2 days prior to virus infection (with a clinical strain).

View Article and Find Full Text PDF

Sapovirus (SaV) is one of the pathogens related to acute gastroenteritis (AGE) in adults and children worldwide. This study reported the diversity of SaV genotypes in children with AGE in Japan from July 2014 to June 2017. Of a total of 2259 stool samples tested by using reverse transcription-PCR method and further analyzed by nucleotide sequencing, 114 (5.

View Article and Find Full Text PDF
Article Synopsis
  • * A study analyzed 1,070 stool samples from children with acute gastroenteritis in Japan and identified 76 positive cases of PeV-A, revealing five different genotypes, notably PeV-A1B as the most common.
  • * The research highlighted significant genetic diversity of PeV-A in Japan and reported clinical symptoms including diarrhea, vomiting, fever, cough, and dehydration, alongside the first detection of the rare PeV-A2 genotype in the country.
View Article and Find Full Text PDF

Introduction: Rotavirus (RV) is the major pathogen responsible for acute gastroenteritis in infants. Since RV vaccines were introduced, a substantial decline in the incidence of severe RV infection has been reported. However, some burden still exists, even in developed countries, including Japan.

View Article and Find Full Text PDF

Group A rotavirus is a leading cause of severe acute gastroenteritis worldwide. In this study, the first complete coding sequences of 11 RNA segments of human group A rotavirus G12P[8] in Japan were determined by an unbiased viral metagenomics. Its genomic constellation (VP7-VP4-VP6-VP1-VP2-VP3-NSP1-NSP2-NSP3-NSP4-NSP5 genes) was identified as G12-P[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1.

View Article and Find Full Text PDF

Multiple aspects of cornea development, including the innervation of the cornea by trigeminal axons, are sensitive to embryonic levels of thyroid hormone (TH). Although previous work showed that increased TH levels could enhance the rate of axonal extension within the cornea in a thyroxine (T4)-dependent manner, details underlying the stimulatory effect of TH on cornea innervation are unclear. Here, by examining the effects throughout all stages of cornea innervation of the two main THs, triiodothyronine (T3) and T4, we provide a more complete characterization of the stimulatory effects of TH on corneal nerves and begin to unravel the underlying molecular mechanisms.

View Article and Find Full Text PDF

A total of 972 stool samples were collected from infants and children with acute gastroenteritis (AGE) in pediatric clinics encompassing six localities (Hokkaido, Tokyo, Shizuoka, Kyoto, Osaka, and Saga) in Japan during the 2-year period from July 2014 to June 2016. Sixty six of the samples (6.8%) were found to be positive for human parechovirus (HPeV) by multiplex reverse transcriptase-polymerase chain reaction (RT-PCR) and subjected to genotyping based on viral protein 1 (VP1) sequences.

View Article and Find Full Text PDF