Efficient Parameterization of Density Functional Tight-Binding for 5-Elements: A Th-O Case Study.

Density functional tight binding (DFTB) models for -element species are challenging to parametrize owing to the large number of adjustable parameters. The explicit optimization of the terms entering the semiempirical DFTB Hamiltonian related to orbitals is crucial to generating a reliable parametrization for -block elements, because they play import roles in bonding interactions. However, since the number of parameters grows quadratically with the number of orbitals, the computational cost for parameter optimization is much more expensive for the -elements than for the main group elements.

Non-ergodic fragmentation upon collision-induced activation of cysteine-water cluster cations.

Cysteine-water cluster cations Cys(HO) and Cys(HO)H are assembled in He droplets and probed by tandem mass spectrometry with collision-induced activation. Benchmark experimental data for this biologically important system are complemented with theory to elucidate the details of the collision-induced activation process. Experimental energy thresholds for successive release of water are compared to water dissociation energies from DFT calculations showing that clusters do not only fragment exclusively by sequential emission of single water molecules but also by the release of small water clusters.

A general approach to study molecular fragmentation and energy redistribution after an ionizing event.

We propose to combine quantum chemical calculations, statistical mechanical methods, and photoionization and particle collision experiments to unravel the redistribution of internal energy of the furan cation and its dissociation pathways. This approach successfully reproduces the relative intensity of the different fragments as a function of the internal energy of the system in photoelectron-photoion coincidence experiments and the different mass spectra obtained when ions ranging from Ar+ to Xe25+ or electrons are used in collision experiments. It provides deep insights into the redistribution of the internal energy in the ionized molecule and its influence on the dissociation pathways and resulting charged fragments.

SCC-DFTB Parameters for Fe-C Interactions.

We present an optimized density-functional tight-binding (DFTB) parameterization for iron-based complexes based on the popular set of parameters. The transferability of the original and optimized parameterizations is assessed using a set of 50 iron complexes, which include carbonyl, cyanide, polypyridine, and cyclometalated ligands. DFTB-optimized structures predicted using the parameters show a good agreement with both experimental crystal geometries and density functional theory (DFT)-optimized structures for Fe-N bond lengths.

Unraveling the structural stability and the electronic structure of ThO clusters.

Unraveling the correlations between the geometry, the relative energy and the electronic structure of metal oxide nanostructures is crucial for a better control of their size, shape and properties. In this work, we investigated these correlations for stoichiometric thorium dioxide clusters ranging from ThO to ThO using a chemically-driven geometry search algorithm in combination with state-of-the-art first principles calculations. This strategy allows us to homogeneously screen the potential energy surface of actinide oxide clusters for the first time.

Development of Density Functional Tight-Binding Parameters Using Relative Energy Fitting and Particle Swarm Optimization.

We provide a strategy to optimize density functional tight-binding (DFTB) parameterization for the calculation of the structures and properties of organic molecules consisting of hydrogen, carbon, nitrogen, and oxygen. We utilize an objective function based on similarity measurements and the Particle Swarm Optimization (PSO) method to find an optimal set of parameters. This objective function considers not only the common DFTB descriptors of binding energies and atomic forces but also incorporates relative energies of isomers into the fitting procedure for more chemistry-driven results.

Dissociation dynamics of the diamondoid adamantane upon photoionization by XUV femtosecond pulses.

This work presents a photodissociation study of the diamondoid adamantane using extreme ultraviolet femtosecond pulses. The fragmentation dynamics of the dication is unraveled by the use of advanced ion and electron spectroscopy giving access to the dissociation channels as well as their energetics. To get insight into the fragmentation dynamics, we use a theoretical approach combining potential energy surface determination, statistical fragmentation methods and molecular dynamics simulations.

Fully versus constrained statistical fragmentation of carbon clusters and their heteronuclear derivatives.

The Microcanonical Metropolis Monte Carlo (MMMC) method has been shown to describe reasonably well fragmentation of clusters composed of identical atomic species. However, this is not so clear in the case of heteronuclear clusters as some regions of phase space might be inaccessible due to the different mobility of the different atomic species, the existence of large isomerization barriers, or the quite different chemical nature of the possible intermediate species. In this paper, we introduce a constrained statistical model that extends the range of applicability of the MMMC method to such mixed clusters.

Furan Fragmentation in the Gas Phase: New Insights from Statistical and Molecular Dynamics Calculations.

We present a complete exploration of the different fragmentation mechanisms of furan (CHO) operating at low and high energies. Three different theoretical approaches are combined to determine the structure of all possible reaction intermediates, many of them not described in previous studies, and a large number of pathways involving three types of fundamental elementary mechanisms: isomerization, fragmentation, and H/H loss processes (this last one was not yet explored). Our results are compared with the existing experimental and theoretical investigations for furan fragmentation.

MC: A Computational Approach To Describe Statistical Fragmentation of Excited Molecules and Clusters.

The Microcanonical Metropolis Monte Carlo method, based on a random sampling of the density of states, is revisited for the study of molecular fragmentation in the gas phase (isolated molecules, atomic and molecular clusters, complex biomolecules, etc.). A random walk or uniform random sampling in the configurational space (atomic positions) and a uniform random sampling of the relative orientation, vibrational energy, and chemical composition of the fragments is used to estimate the density of states of the system, which is continuously updated as the random sampling populates individual states.

Structure, Ionization, and Fragmentation of Neutral and Positively Charged Hydrogenated Carbon Clusters: C(n)H(m)(q+) (n = 1-5, m = 1-4, q = 0-3).

In this work we present a systematic theoretical study of neutral and positively charged hydrogenated carbon clusters (C(n)H(m)(q+) with n = 1–5, m = 1–4, and q = 0–3). A large number of isomers and spin states (1490 in total) was investigated. For all of them, we optimized the geometry and computed the vibrational frequencies at the B3LYP/6-311++G(3df,2dp) level of theory; more accurate values of the electronic energy were obtained at the CCSD(T)/6-311++G(3df,2dp) level over the geometry previously obtained.

Communication: unraveling the (4)He droplet-mediated soft-landing from ab initio-assisted and time-resolved density functional simulations: Au@(4)He300/TiO2(110).

An ab-initio-based methodological scheme for He-surface interactions and zero-temperature time-dependent density functional theory for superfluid (4)He droplets motion are combined to follow the short-time collision dynamics of the Au@(4)He300 system with the TiO2(110) surface. This composite approach demonstrates the (4)He droplet-assisted sticking of the metal species to the surface at low landing energy (below 0.15 eV/atom), thus providing the first theoretical evidence of the experimentally observed (4)He droplet-mediated soft-landing deposition of metal nanoparticles on solid surfaces [Mozhayskiy et al.

Including nuclear quantum effects into highly correlated electronic structure calculations of weakly bound systems.

An interface between the APMO code and the electronic structure package MOLPRO is presented. The any particle molecular orbital APMO code [González et al., Int.

Solvent states and spectroscopy of doped helium clusters as a quantum-chemistry-like problem.

The Full-Configuration-Interaction Nuclear-Orbital (FCI-NO) approach [J. Chem. Phys.

Helium mediated deposition: modeling the He-TiO2(110)-(1×1) interaction potential and application to the collision of a helium droplet from density functional calculations.

This paper is the first of a two-part series dealing with quantum-mechanical (density-functional-based) studies of helium-mediated deposition of catalytic species on the rutile TiO(2)(110)-(1×1) surface. The interaction of helium with the TiO(2)(110)-(1×1) surface is first evaluated using the Perdew-Burke-Ernzerhof functional at a numerical grid dense enough to build an analytical three-dimensional potential energy surface. Three (two prototype) potential models for the He-surface interaction in helium scattering calculations are analyzed to build the analytical potential energy surface: (1) the hard-corrugated-wall potential model; (2) the corrugated-Morse potential model; and (3) the three-dimensional Morse potential model.

Quantum solvent states and rovibrational spectra of small doped (3)He clusters through the full-configuration-interaction nuclear orbital approach: The ((3)He)(N)-Cl(2)(X) case (N

A full-configuration-interaction nuclear orbital treatment has been recently developed as a benchmark quantum-chemistry-like method to study small doped (3)He clusters [M. P. de Lara-Castells et al.

Graph theoretical similarity approach to compare molecular electrostatic potentials.

In this work we introduce a graph theoretical method to compare MEPs, which is independent of molecular alignment. It is based on the edit distance of weighted rooted trees, which encode the geometrical and topological information of Negative Molecular Isopotential Surfaces. A meaningful chemical classification of a set of 46 molecules with different functional groups was achieved.