Early bread mold detection through microscopic images using convolutional neural network.

Mold on bread in the early stages of growth is difficult to discern with the naked eye. Visual inspection and expiration dates are imprecise approaches that consumers rely on to detect bread spoilage. Existing methods for detecting microbial contamination, such as inspection through a microscope and hyperspectral imaging, are unsuitable for consumer use.

AIKYATAN: mapping distal regulatory elements using convolutional learning on GPU.

Background: The data deluge can leverage sophisticated ML techniques for functionally annotating the regulatory non-coding genome. The challenge lies in selecting the appropriate classifier for the specific functional annotation problem, within the bounds of the hardware constraints and the model's complexity. In our system AIKYATAN, we annotate distal epigenomic regulatory sites, e.

Opening up the blackbox: an interpretable deep neural network-based classifier for cell-type specific enhancer predictions.

Background: Gene expression is mediated by specialized cis-regulatory modules (CRMs), the most prominent of which are called enhancers. Early experiments indicated that enhancers located far from the gene promoters are often responsible for mediating gene transcription. Knowing their properties, regulatory activity, and genomic targets is crucial to the functional understanding of cellular events, ranging from cellular homeostasis to differentiation.