Publications by authors named "Nataliya Sumbatyan"

Article Synopsis
  • A new tool for monitoring in vitro protein translation using BODIPY-Met-tRNA is introduced, which provides a simple and convenient approach.
  • This method enables the observation of the synthesis and release of very short peptides (1-7 amino acids) through urea-polyacrylamide gel electrophoresis.
  • It offers high-resolution insights into various stages of translation, including initiation, peptide transfer, translocation, and termination, allowing for detailed assessment of these processes.
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During protein synthesis the nascent polypeptide chain (NC) extends through the ribosomal exit tunnel (NPET). Also, the large group of macrolide antibiotics binds in the nascent peptide exit tunnel. In some cases interaction of NC with NPET leads to the ribosome stalling, a significant event in regulation of translation.

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A unique phenomenon of mitochondria-targeted protonophores is described. It consists in a transmembrane H(+)-conducting fatty acid cycling mediated by penetrating cations such as 10-(6'-plastoquinonyl)decyltriphenylphosphonium (SkQ1) or dodecyltriphenylphosphonium (C(12)TPP). The phenomenon has been modeled by molecular dynamics and directly proved by experiments on bilayer planar phospholipid membrane, liposomes, isolated mitochondria, and yeast cells.

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To improve antisense oligonucleotide penetration inside cells, conjugates of oligonucleotides and cell-penetrating peptides, covalently linked through a phosphoramide bond, were prepared by a fragment coupling approach in the liquid phase. Two methods were used for this synthesis, i.e.

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