Determination of binding modes and binding constants for the complexes of 6H-pyrido[4,3-b]carbazole derivatives with DNA.

The binding modes and binding constants for the complexes of forty types of pyridocarbazole derivatives 1-40 with double stranded DNAs (dsDNAs) were reported. The binding modes were determined by a combination of a deflection spectroscopy and orientation of the corresponding molecule in the DNA-based film with chain alignment. All of the compounds exhibited the intercalation-binding mode.

Judgment for DNA-binding modes of dye molecules by novel chain-aligned film method.

We have succeeded in preparation of novel composite films composed of chain-oriented DNA and the DNA-binding dyes aligned in specific orientation by drying the solution under a horizontal magnetic field. The dye-DNA composite films mostly showed linear dichroism, as revealed by polarized ultraviolet-visible spectroscopy (UV-VIS) and fluorescence anisotropy measurement. The intercalators such as ethidium bromide was fixed in chain-oriented DNA films in a similar binding manner as in solutions.

Orientation of dye molecules in DNA-based films with chain alignment and judgment of their DNA-binding modes.

Novel composite films of chain-oriented DNA, which contain the DNA-binding dyes aligned in specific orientation, were successfully prepared by drying the solution under a horizontal magnetic field. Most of the dye-DNA composite films showed linear dichroism, as revealed by polarized ultraviolet-visible (UV-vis) spectroscopy. The intercalators, ethidium bromide and acridine orange, were fixed in chain-oriented DNA films in a similar binding manner as in solutions.

Molecular orientation of porphyrins accompanying the formation of chain-aligned DNA films.

Porphyrin-containing DNA solid films with several binding orientations were successfully prepared by drying the aqueous solution of porphyrins and DNA in a magnetic field. By the measurement of linear dichroism absorption spectra from three identical spatial directions, the molecular orientations of porphyrins in chain-aligned DNA films were evaluated. Tetra(N-methylpyridinium-4-yl)-porphyrin was found to be bound at the surface of DNA chains like a patch.

Annular self-assembly of DNA molecular chains occurring in natural dry process of diluted solutions.

The molecular orientation of DNA membranes, which were prepared by subjecting diluted solution of salmon sperm DNA to a natural drying process, was examined. X-ray diffraction and polarization microscopy revealed that the dried membranes have zonal structures. Each zone shows different features in molecular orientation.

Molecular chain orientation of DNA films induced by both the magnetic field and the interfacial effect.

DNA films showing highly homogeneous orientation of molecular chains were successfully prepared by drying a semidiluted solution in a horizontal magnetic field. Most of the molecular chain elements in the obtained film were found to be one-dimensionally oriented, as shown by X-ray diffraction, polarization microscopy, and linear dichroism spectroscopy. Because a DNA chain is theoretically expected to orientate only in divergent directions perpendicular to a magnetic field, this result suggests that the DNA chains were aligned not only by a magnetic field but also by the interfacial effect that induced the chains to fit along the air-liquid interface.