Publications by authors named "N E Sannikova"

The binding of G-quadruplex structures (G4s) with photosensitizers is of considerable importance in medicinal chemistry and drug discovery due to their promising potential in photodynamic therapy applications. G4s can experience structural changes as a result of ligand interactions and light exposure. Understanding these modifications is essential to uncover the fundamental biological roles of the complexes and optimize their therapeutic potential.

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Photo-excited triplet states represent a new class of spin labels in pulse electron paramagnetic resonance (EPR), attracting increasing attention because of their unique spectroscopic properties. Despite certain advantages, the use of photo-labels has also some challenges, low repetition rates due to technical laser-related limitations and intrinsic properties of the labels. The application of additional pulse trains for multiple refocusing of the electron spin echo and integration of all observed echoes can significantly enhance sensitivity at a given repetition rate.

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Zeolite imidazolate framework-8 (ZIF-8) is a promising platform for drug delivery, and information regarding the stability of ZIF-8 nanoparticles in cell culture media is essential for proper interpretation of in vitro experimental results. In this work, we report a quantitative investigation of the ZIF-8 nanoparticle's stability in most common cell culture media. To this purpose, ZIF-8 nanoparticles containing sterically shielded nitroxide probes with high resistance to reduction were synthesized and studied using electron paramagnetic resonance (EPR).

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Carbasugars are structural mimics of naturally occurring carbohydrates that can interact with and inhibit enzymes involved in carbohydrate processing. In particular, carbasugars have attracted attention as inhibitors of glycoside hydrolases (GHs) and as therapeutic leads in several disease areas. However, it is unclear how the carbasugars are recognized and processed by GHs.

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Article Synopsis
  • Tylopeptin B is a peptide with antibacterial properties against Gram-positive bacteria, working by altering bacterial membrane characteristics and increasing permeability, often through self-assembling into channels.
  • Research using pulsed double electron-electron resonance (DEER) shows that Tylopeptin B begins to self-assemble at low concentrations (0.1 mol%) and forms stable clusters at higher concentrations (above 0.2 mol%) with an average cluster size of about 3.3 peptides.
  • DEER and electron spin echo envelope modulation (ESEEM) techniques indicate that at concentrations from 0.1 to 0.2 mol%, Tylopeptin B clusters repel
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