Publications by authors named "Mohammed Rahman"

Background: To optimize vaccination strategies, it is useful to detect breakthrough infections and assess vaccine effectiveness in programmatic use. Monitoring emerging SARS-CoV-2 variants and vaccine effectiveness against them is also essential to determine the most effective vaccine options. This study aims to monitor SARS-CoV-2 breakthrough infections, the emergence of new SARS-CoV-2 variants, and host immune response during the peri-infection period of COVID-19.

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Multiplexed error-robust fluorescence in situ hybridization (MERFISH) allows genome-scale imaging of RNAs in individual cells in intact tissues. To date, MERFISH has been applied to image thin-tissue samples of ~10 µm thickness. Here, we present a thick-tissue three-dimensional (3D) MERFISH imaging method, which uses confocal microscopy for optical sectioning, deep learning for increasing imaging speed and quality, as well as sample preparation and imaging protocol optimized for thick samples.

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According to sparse information from various countries, the seasonal influenza virus circulation has drastically decreased during the COVID-19 pandemic. Here, we show the cross-reactivity of anti-SARS-CoV-2 antibodies against influenza viruses. Plasma samples were collected from 311 SARS-CoV-2 infected individuals.

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  • - This study investigated SARS-CoV-2 strains in Erbil City between October 2021 and January 2022, focusing on their genetic lineages and evolutionary features by analyzing throat and nasopharyngeal swab specimens via qRT-PCR and NGS of the S gene.
  • - Out of 20 RNA extracts, 12 sequences were valid; 10 were identified as Delta variants and 2 as Omicron variants, with specific sublineages for each variant (AY.33 and AY.4 for Delta, BA.1.1 for Omicron).
  • - Significant mutations were noted in the spike protein of both variants, with Delta showing varied mutations and Omicron possessing 33 mutations, mostly in the
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Ion beam-induced deposition (IBID) using Pt(CO)Cl and Pt(CO)Br as precursors has been studied with ultrahigh-vacuum (UHV) surface science techniques to provide insights into the elementary reaction steps involved in deposition, complemented by analysis of deposits formed under steady-state conditions. X-ray photoelectron spectroscopy (XPS) and mass spectrometry data from monolayer thick films of Pt(CO)Cl and Pt(CO)Br exposed to 3 keV Ar, He, and H ions indicate that deposition is initiated by the desorption of both CO ligands, a process ascribed to momentum transfer from the incident ion to adsorbed precursor molecules. This precursor decomposition step is accompanied by a decrease in the oxidation state of the Pt(II) atoms and, in IBID, represents the elementary reaction step that converts the molecular precursor into an involatile PtX species.

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Lipids are implicated in the development of coronary atherosclerosis. Achieving a significant reduction in lipid levels remains a crucial aspect of secondary prevention following an acute coronary syndrome event. Novel lipid-lowering therapies now provide clinicians with a variety of therapeutic strategies to choose from and tailor to individual patient needs.

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  • The study investigated the prevalence and characteristics of human metapneumovirus (hMPV) in children with severe pneumonia across seven African and Asian countries, finding a significant correlation between hMPV and pneumonia cases compared to community controls.
  • HMPV was more frequently detected in hospitalized pneumonia cases (6.9%) than in controls (2.3%), with a notable negative association with RSV and a positive association with bacterial infections.
  • The majority of hMPV-positive cases were infants under one year, with low mortality rates similar to those of RSV-positive cases, indicating that hMPV pneumonia is challenging to distinguish from RSV pneumonia in clinical settings.
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  • Bangladesh has faced over 560 H5N1 outbreaks in poultry since 2007, primarily affecting commercial chicken farms that use imported vaccines which may not align with local virus strains.
  • A study examined the effectiveness of these vaccines by sampling feces from vaccinated and unvaccinated chicken farms across the country, finding only a small percentage of farms tested positive for the virus.
  • Results indicated that vaccinated farms had a lower detection of H5N1 virus, but due to low vaccination rates and limited positive samples, the overall effectiveness of the vaccine in reducing viral shedding remains uncertain.
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  • EnteroBase is a web-based platform that offers curated databases of genome sequences from over 1.1 million bacterial isolates, including notable pathogens like Streptococcus and Mycobacterium tuberculosis.
  • The platform now features tools for detecting antimicrobial resistance and a new bubble plot tool for visualizing bacterial genomic structures.
  • Enhanced access and functionalities are provided through a user-friendly interface and a RESTful API, with ongoing development by an international consortium to improve and maintain the system.
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Periodontal diseases are chronic inflammatory conditions influenced by bacterial biofilm formation and host immune responses, affecting millions worldwide. Traditional treatments like mechanical debridement and systemic antibiotics often face limitations, including biofilm resilience and antibiotic resistance. Gum Arabic (GA), a natural exudate from trees, presents a promising alternative with its anti-biofilm and anti-inflammatory properties.

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High pathogenicity avian influenza (HPAI) virus H5N1 first emerged in Bangladesh in 2007. Despite the use of vaccines in chickens since 2012 to control HPAI, HPAI H5Nx viruses have continued to infect poultry, and wild birds, resulting in notable mass mortalities in house crows (). The first HPAI H5Nx viruses in Bangladesh belonged to clade 2.

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The first case of COVID-19 was detected in Bangladesh on 8 March 2020. Since then, the Government of Bangladesh (GoB) has implemented various measures to limit the transmission of COVID-19, including widespread testing facilities across the nation through a laboratory network for COVID-19 molecular testing. This study aimed to analyze the dynamics of SARS-CoV-2 in Bangladesh by conducting COVID-19 testing and genomic surveillance of the virus variants throughout the pandemic.

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  • * Researchers developed a simple "mix-and-read" biosensor using a split NanoLuc luciferase to detect anti-NiV antibodies in samples, validated with over 700 serum samples from Bangladesh.
  • * The new biosensor showed high sensitivity (98.6%) and specificity (100%) compared to existing tests, though it is less effective for detecting antibodies shortly after symptoms begin, making it a valuable tool for NiV surveillance and outbreak investigations.
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An electrochemical nitrite sensor probe is introduced herein using a modified flat glassy carbon electrode (GCE) and SrTiO material doped with spherical-shaped gold nanoparticles (Au-NPs) and polypyrrole carbon (PPyC) at a pH of 7.0 in a phosphate buffer solution. The nanocomposites (NCs) containing Au-NPs, PPyC, and SrTiO were synthesized by ultrasonication, and their properties were thoroughly characterized through structural, elemental, optical, and morphological analyses with various conventional spectroscopic methods, such as field-emission scanning electron microscopy, energy-dispersive X-ray spectroscopy, high-resolution transmission electron microscopy, powder X-ray diffraction, X-ray photoelectron spectroscopy, and Brunauer-Emmett-Teller method.

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Parenting behavior comprises a variety of adult-infant and adult-adult interactions across multiple timescales. The state transition from nonparent to parent requires an extensive reorganization of individual priorities and physiology and is facilitated by combinatorial hormone action on specific cell types that are integrated throughout interconnected and brainwide neuronal circuits. In this review, we take a comprehensive approach to integrate historical and current literature on each of these topics across multiple species, with a focus on rodents.

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  • - The study focuses on the Japanese encephalitis virus (JEV) in Bangladesh, highlighting the need for a vaccine due to limited knowledge on its ecology and impact on human health.
  • - A seroprevalence study revealed that 19.0% of respondents had JEV antibodies, indicating prior exposure, while annual infection rates were estimated at 0.7%, predominantly linked to proximity to pigs.
  • - The research identified 10 mosquito species associated with JEV transmission and estimated a severe disease rate of 1 in 1,000 infections, with 76% of severe cases going unnoticed by current surveillance methods.
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  • Antisense oligonucleotides (ASOs) are important in biology for regulating protein expression by binding to specific RNA sequences, and their stability and specificity are improved through synthetic modifications like phosphorothioate and locked nucleic acid.
  • To study gapmer ASOs, advanced mass spectrometry techniques, such as ultraviolet photodissociation and various fragmentation methods, were employed, providing insights into how the structure affects the cleavage.
  • The analysis process used 2DMS for comprehensive data coverage and a custom Python script to manage modifications and produce mass lists, which enhanced signal quality and identification accuracy.
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We evaluated a novel dual active pharmaceutical ingredient (API) drug-coated balloon (DCB), which consists of a coating of nanoparticles encapsulating low-dose paclitaxel (PTX) in combination with sirolimus in a synergistic ratio. Compared to the PTX DCB, the dual API DCB demonstrated similar inhibition of cell proliferation in vitro but at a significantly lower total drug dose (over 13 times lower than sirolimus nanoparticles). Animal experiments demonstrated that the dual API DCB is more effective in inhibiting intimal cell proliferation with insignificant downstream embolic effects and myocardial damage compared to the PTX DCB.

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MXenes (MXT), a subgroup of 2-dimensional (2D) materials, specifically comprise transition metal carbides, nitrides, and carbonitrides. They exhibit exceptional electrocatalytic and photocatalytic properties, making them well-suited for the detection and removal of pollutants from aqueous environments. Because of their high surface area and remarkable properties, they are being utilized in various applications, including catalysis, sensing, and adsorption, to combat pollution and mitigate its adverse effects.

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Background: Enhancing outcomes post-hospitalisation requires an understanding of predictive factors for adverse events. This study aimed to estimate post-discharge mortality rates among patients with severe acute respiratory infection (SARI) in Bangladesh, identify associated factors, and document reported causes of death.

Methods: From January 2012 to December 2019, we conducted follow-up calls to patients or their families 30 days after discharge to assess the status of patients with SARI.

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Avian influenza virus (AIV) is of major concern to livestock, wildlife, and human health. In many countries in the world, including Bangladesh, AIV is endemic in poultry, requiring improving biosecurity. In Bangladesh, we investigated how variation in biosecurity practices in commercial chicken farms affected their AIV infection status to help guide AIV mitigation strategies.

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Background: Global influenza-associated acute respiratory infections contribute to 3-5 million severe illnesses requiring hospitalization annually, with 90% of hospitalizations occurring among children < 5 years in developing countries. In Bangladesh, the inadequate availability of nationally representative, robust estimates of influenza-associated hospitalizations limits allocation of resources for prevention and control measures.

Methods: This study used data from the hospital-based influenza surveillance (HBIS) system in Bangladesh from 2010 to 2019 and healthcare utilization surveys to determine hospital utilization patterns in the catchment area.

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The global human population is growing and demand for food is increasing. Global agriculture faces numerous challenges, including excessive application of synthetic pesticides, emergence of herbicide-and pesticide-resistant pathogenic microbes, and more frequent natural disasters associated with global warming. Searches for valuable endophytes have increased, with the aim of making agriculture more sustainable and environmentally friendly.

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The swift pace of socioeconomic development and climatic change have put significant strain on the quality of water resources. While, the bulk availability of agro-based materials arising from nature and agricultural practices has paved the way for researchers to utilize them in eradicating toxic industrial pollutants such as dyes, heavy metals, phenolic compounds, pesticides, etc. by using them as adsorbents.

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