Publications by authors named "Miranda Mecha"

Article Synopsis
  • Proteins released from the ribosome are prone to aggregating, making chaperones like Hsp70 and trigger factor (TF) crucial for maintaining their solubility and structure early in their life.
  • Research showed that while Hsp70 can help with the solubility of newly synthesized proteins, its effectiveness is highly dependent on the specific protein sequence and may not prevent all types of aggregates.
  • The findings reveal limitations in Hsp70's ability to protect against protein aggregation, particularly for proteins that are highly prone to forming aggregates, indicating a need for improved strategies to manage these issues post-ribosome release.
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Article Synopsis
  • Proper protein folding is crucial for the health of living organisms, but the process of how unfolded proteins achieve their functional/native state is not fully understood.
  • Some proteins can reach their native state upon dilution from denaturant, while many others misfold and aggregate, influenced by their concentration.
  • The review emphasizes the importance of initial protein life stages and highlights the teamwork between molecular chaperones and other cellular components that help proteins avoid aggregation and maintain their bioactive state.
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Low-concentration photochemically induced dynamic nuclear polarization (LC-photo-CIDNP) has recently emerged as an effective tool for the hyperpolarization of aromatic amino acids in solution, either in isolation or within proteins. One factor limiting the maximum achievable signal-to-noise ratio in LC-photo-CIDNP is the progressive degradation of the target molecule and photosensitizer upon long-term optical irradiation. Fortunately, this effect does not cause spectral distortions but leads to a progressively smaller signal buildup upon long-term data-collection (e.

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The relation between co- and post-translational protein folding and aggregation in the cell is poorly understood. Here, we employ a combination of fluorescence anisotropy decays in the frequency domain, fluorescence-detected solubility assays, and NMR spectroscopy to explore the role of the ribosome in protein folding within a biologically relevant context. First, we find that a primary function of the ribosome is to promote cotranslational nascent-protein solubility, thus supporting cotranslational folding even in the absence of molecular chaperones.

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The degree of hydrophobicity and net charge per residue are physical properties that enable the discrimination of folded from intrinsically disordered proteins (IDPs) solely on the basis of amino acid sequence. Here, we improve upon the existing classification of proteins and IDPs based on the parameters mentioned above by adopting the scale of nonpolar content of Rose et al. and by taking amino acid side-chain acidity and basicity into account.

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Solution-state NMR typically requires 100 μM to 1 mM samples. This limitation prevents applications to mass-limited and aggregation-prone target molecules. Photochemically induced dynamic nuclear polarization was adapted to data collection on low-concentration samples by radiofrequency gating, enabling rapid 1D NMR spectral acquisition on aromatic amino acids and proteins bearing aromatic residues at nanomolar concentration, i.

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