H-Translocating Membrane-Bound Pyrophosphatase from Fuels Cells via an Alternative Pathway for Energy Generation.

Inorganic pyrophosphatases (PPases) catalyze an essential reaction, namely, the hydrolysis of PP, which is formed in large quantities as a side product of numerous cellular reactions. In the majority of living species, PP hydrolysis is carried out by soluble cytoplasmic PPase (S-PPases) with the released energy dissipated in the form of heat. In part of this energy can be conserved by proton-pumping pyrophosphatase (H-PPase) in the form of a proton electrochemical gradient for further ATP synthesis.

Universal Actuator for Efficient Silencing of Genes Based on Convergent Transcription Resistant to Rho-Dependent Termination.

Dynamic control is a distinguished strategy in modern metabolic engineering, in which inducible convergent transcription is an attractive approach for conditional gene silencing. Instead of a simple strong "reverse" () promoter, a three-component actuator has been developed for constitutive genes silencing. These actuators, consisting of promoters with different strengths, the ribosomal transcription antitermination-inducing sequence -AT, and the RNase III processing site, were inserted into the 3'-UTR of three metabolic genes.

OpenFLUX2: (13)C-MFA modeling software package adjusted for the comprehensive analysis of single and parallel labeling experiments.

Background: Steady-state (13)C-based metabolic flux analysis ((13)C-MFA) is the most powerful method available for the quantification of intracellular fluxes. These analyses include concertedly linked experimental and computational stages: (i) assuming the metabolic model and optimizing the experimental design; (ii) feeding the investigated organism using a chosen (13)C-labeled substrate (tracer); (iii) measuring the extracellular effluxes and detecting the (13)C-patterns of intracellular metabolites; and (iv) computing flux parameters that minimize the differences between observed and simulated measurements, followed by evaluating flux statistics. In its early stages, (13)C-MFA was performed on the basis of data obtained in a single labeling experiment (SLE) followed by exploiting the developed high-performance computational software.