Dataset of fundus images for the diagnosis of ocular toxoplasmosis.

Toxoplasmosis chorioretinitis is commonly diagnosed by an ophthalmologist through the evaluation of the fundus images of a patient. Early detection of these lesions may help to prevent blindness. In this article we present a data set of fundus images labeled into three categories: healthy eye, inactive and active chorioretinitis.

Automatic Diagnosis of Diabetic Retinopathy from Fundus Images Using Neuro-Evolutionary Algorithms.

Due to the presence of high glucose levels, diabetes mellitus (DM) is a widespread disease that can damage blood vessels in the retina and lead to loss of the visual system. To combat this disease, called Diabetic Retinopathy (DR), retinography, using images of the fundus of the retina, is the most used method for the diagnosis of Diabetic Retinopathy. The Deep Learning (DL) area achieved high performance for the classification of retinal images and even achieved almost the same human performance in diagnostic tasks.

Measuring Interactions in Categorical Datasets Using Multivariate Symmetrical Uncertainty.

Interaction between variables is often found in statistical models, and it is usually expressed in the model as an additional term when the variables are numeric. However, when the variables are categorical (also known as nominal or qualitative) or mixed numerical-categorical, defining, detecting, and measuring interactions is not a simple task. In this work, based on an entropy-based correlation measure for nominal variables (named as Multivariate Symmetrical Uncertainty (MSU)), we propose a formal and broader definition for the interaction of the variables.

Distribution level electric current consumption and meteorological data set of the east region of Paraguay.

This paper presents a data set with information on meteorological data and electricity consumption in the department of Alto Paraná, Paraguay. The meteorological data were registered every three hours at the Aeropuerto Guarani, Department of Alto Paraná, which belongs to the Dirección Nacional de Aeronáutica Civil of Paraguay. The final data consists of a total of 22.

A Trust-Based Methodology to Evaluate Deep Learning Models for Automatic Diagnosis of Ocular Toxoplasmosis from Fundus Images.

In the automatic diagnosis of ocular toxoplasmosis (OT), Deep Learning (DL) has arisen as a powerful and promising approach for diagnosis. However, despite the good performance of the models, decision rules should be interpretable to elicit trust from the medical community. Therefore, the development of an evaluation methodology to assess DL models based on interpretability methods is a challenging task that is necessary to extend the use of AI among clinicians.

Dataset from fundus images for the study of diabetic retinopathy.

This article presents a database containing 757 color fundus images acquired at the Department of Ophthalmology of the Hospital de Clínicas, Facultad de Ciencias Médicas (FCM), Universidad Nacional de Asunción (UNA), Paraguay. Firstly, the retinal images were acquired with a clinical procedure presented in this paper. The acquisition of the retinographies was made through the Visucam 500 camera of the Zeiss brand.

Automatic Diagnosis of Ocular Toxoplasmosis from Fundus Images with Residual Neural Networks.

Ocular toxoplasmosis (OT) is commonly diagnosed through the analysis of fundus images of the eye by a specialist. Despite Deep Learning being widely used to process and recognize pathologies in medical images, the diagnosis of ocular toxoplasmosis(OT) has not yet received much attention. A predictive computational model is a valuable time-saving option if used as a support tool for the diagnosis of OT.

Genome-wide prediction of topoisomerase IIβ binding by architectural factors and chromatin accessibility.

DNA topoisomerase II-β (TOP2B) is fundamental to remove topological problems linked to DNA metabolism and 3D chromatin architecture, but its cut-and-reseal catalytic mechanism can accidentally cause DNA double-strand breaks (DSBs) that can seriously compromise genome integrity. Understanding the factors that determine the genome-wide distribution of TOP2B is therefore not only essential for a complete knowledge of genome dynamics and organization, but also for the implications of TOP2-induced DSBs in the origin of oncogenic translocations and other types of chromosomal rearrangements. Here, we conduct a machine-learning approach for the prediction of TOP2B binding using publicly available sequencing data.

Computational Methods for the Analysis of Genomic Data and Biological Processes.

Today, new technologies, such as microarrays or high-performance sequencing, are producing more and more genomic data [...

A Comparative Study of Supervised Machine Learning Algorithms for the Prediction of Long-Range Chromatin Interactions.

The role of three-dimensional genome organization as a critical regulator of gene expression has become increasingly clear over the last decade. Most of our understanding of this association comes from the study of long range chromatin interaction maps provided by Chromatin Conformation Capture-based techniques, which have greatly improved in recent years. Since these procedures are experimentally laborious and expensive, in silico prediction has emerged as an alternative strategy to generate virtual maps in cell types and conditions for which experimental data of chromatin interactions is not available.

Computational Analysis of the Global Effects of in the Immune Response to Coronavirus Infection Using Gene Networks.

Gene networks have arisen as a promising tool in the comprehensive modeling and analysis of complex diseases. Particularly in viral infections, the understanding of the host-pathogen mechanisms, and the immune response to these, is considered a major goal for the rational design of appropriate therapies. For this reason, the use of gene networks may well encourage therapy-associated research in the context of the coronavirus pandemic, orchestrating experimental scrutiny and reducing costs.

A multi-objective approach for designing optimized operation sequence on binary image processing.

In binary image segmentation, the choice of the order of the operation sequence may yield to suboptimal results. In this work, we propose to tackle the associated optimization problem via multi-objective approach. Given the original image, in combination with a list of morphological, logical and stacking operations, the goal is to obtain the ideal output at the lowest computational cost.

Computational Inference of Gene Co-Expression Networks for the identification of Lung Carcinoma Biomarkers: An Ensemble Approach.

Gene Networks (GN), have emerged as an useful tool in recent years for the analysis of different diseases in the field of biomedicine. In particular, GNs have been widely applied for the study and analysis of different types of cancer. In this context, Lung carcinoma is among the most common cancer types and its short life expectancy is partly due to late diagnosis.

Predictive Models for the Medical Diagnosis of Dengue: A Case Study in Paraguay.

Early diagnosis of dengue continues to be a concern for public health in countries with a high incidence of this disease. In this work, we compared two machine learning techniques: artificial neural networks (ANN) and support vector machines (SVM) as assistance tools for medical diagnosis. The performance of classification models was evaluated in a real dataset of patients with a previous diagnosis of dengue extracted from the public health system of Paraguay during the period 2012-2016.

Entropy and Contrast Enhancement of Infrared Thermal Images Using the Multiscale Top-Hat Transform.

Discrete entropy is used to measure the content of an image, where a higher value indicates an image with richer details. Infrared images are capable of revealing important hidden targets. The disadvantage of this type of image is that their low contrast and level of detail are not consistent with human visual perception.

The blessing of Dimensionality: Feature Selection outperforms functional connectivity-based feature transformation to classify ADHD subjects from EEG patterns of phase synchronisation.

Functional connectivity (FC) characterizes brain activity from a multivariate set of N brain signals by means of an NxN matrix A, whose elements estimate the dependence within each possible pair of signals. Such matrix can be used as a feature vector for (un)supervised subject classification. Yet if N is large, A is highly dimensional.

Peakbin selection in mass spectrometry data using a consensus approach with estimation of distribution algorithms.

Progress is continuously being made in the quest for stable biomarkers linked to complex diseases. Mass spectrometers are one of the devices for tackling this problem. The data profiles they produce are noisy and unstable.