Publications by authors named "Michal Kepa"

G protein-coupled receptors (GPCRs) are the largest family of cell surface receptors in humans. The binding and dissociation of ligands tunes the inherent conformational flexibility of these important drug targets towards distinct functional states. Here we show how to trigger and resolve protein-ligand interaction dynamics within the human adenosine A receptor.

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Time-resolved serial crystallography at X-ray Free Electron Lasers offers the opportunity to observe ultrafast photochemical reactions at the atomic level. The technique has yielded exciting molecular insights into various biological processes including light sensing and photochemical energy conversion. However, to achieve sufficient levels of activation within an optically dense crystal, high laser power densities are often used, which has led to an ongoing debate to which extent photodamage may compromise interpretation of the results.

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Article Synopsis
  • X-ray free-electron lasers (XFELs) are advancing time-resolved structural experiments, essential for understanding macromolecule functions and mechanisms.
  • The SwissMX sample-delivery system was tested at SwissFEL using a micro-structured polymer chip, focusing on the light-sensitive protein LOV1 to avoid light contamination during pump-probe experiments.
  • The opaque MISP chips enabled effective studies of LOV1's structural dynamics, confirming a crucial bond formation and suggesting potential for increased XFEL project efficiency by reducing protein sample usage.
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Serial crystallography at X-ray free-electron lasers (XFELs) permits the determination of radiation-damage free static as well as time-resolved protein structures at room temperature. Efficient sample delivery is a key factor for such experiments. Here, we describe a multi-reservoir, high viscosity extruder as a step towards automation of sample delivery at XFELs.

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Article Synopsis
  • Serial and time-resolved macromolecular crystallography is gaining popularity, but limited beam time at X-ray facilities and insufficient infrastructure at synchrotrons pose challenges.
  • A new setup using the JUNGFRAU detector allows for kilohertz serial crystallography and captures multiple-time-point dynamics of proteins at synchrotrons, greatly improving data collection speed.
  • The system demonstrated effective collection of high-quality X-ray data from lysozyme microcrystals in just 1 minute and enabled observations of protein dynamics at a resolution of 1 millisecond, with plans for automation in data handling to support researchers.
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Since the Komodo dragon has been included on The International Union for Conservation of Nature (IUCN) Red List of Threatened Species, it is crucial to know in detail its biology as there is a limited availability of research material on these animals-mainly those who died in zoos or whose remains were found in the wild. Anatomy is essential for understanding physiology, identification of diseases, adaptations in the environment, and behavior. In this dissection study, the relationship of individual anatomical structures was analyzed, the anatomy of the active and passive movement system of the thoracic limb was described, photographs were taken, and a radiographic examination was conducted.

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Fixed targets are a popular form of sample-delivery system used in serial crystallography at synchrotron and X-ray free-electron laser sources. They offer a wide range of sample-preparation options and are generally easy to use. The supports are typically made from silicon, quartz or polymer.

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Acoustic levitation has attracted attention in terms of chemical and biochemical analysis in combination with various analytical methods because of its unique container-less environment for samples that is not reliant on specific material characteristics. However, loading samples with very high viscosity is difficult. To expand the scope, we propose the use of polymer thin films as sample holders, whereby the sample is dispensed on a film that is subsequently loaded onto an acoustic levitator.

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Conjugated polymers enable the production of flexible semiconductor devices that can be processed from solution at low temperatures. Over the past 25 years, device performance has improved greatly as a wide variety of molecular structures have been studied. However, one major limitation has not been overcome; transport properties in polymer films are still limited by pervasive conformational and energetic disorder.

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