Stripe noise removal in conductive atomic force microscopy.

Conductive atomic force microscopy (c-AFM) can provide simultaneous maps of the topography and electrical current flow through materials with high spatial resolution and it is playing an increasingly important role in the characterization of novel materials that are being investigated for novel memory devices. However, noise in the form of stripe features often appear in c-AFM images, challenging the quantitative analysis of conduction or topographical information. To remove stripe noise without losing interesting information, as many as sixteen destriping methods are investigated in this paper, including three additional models that we propose based on the stripes characteristics, and thirteen state-of-the-art destriping methods.

A Fast Alpha-Tree Algorithm for Extreme Dynamic Range Pixel Dissimilarities.

The α-tree algorithm is a useful hierarchical representation technique which facilitates comprehension of images such as remote sensing and medical images. Most α-tree algorithms make use of priority queues to process image edges in a correct order, but because traditional priority queues are inefficient in α-tree algorithms using extreme-dynamic-range pixel dissimilarities, they run slower compared with other related algorithms such as component tree. In this paper, we propose a novel hierarchical heap priority queue algorithm that can process α-tree edges much more efficiently than other state-of-the-art priority queues.

Distributed Connected Component Filtering and Analysis in 2D and 3D Tera-Scale Data Sets.

Connected filters and multi-scale tools are region-based operators acting on the connected components of an image. Component trees are image representations to efficiently perform these operations as they represent the inclusion relationship of the connected components hierarchically. This paper presents disccofan (DIStributed Connected COmponent Filtering and ANalysis), a new method that extends the previous 2D implementation of the Distributed Component Forests (DCFs) to handle 3D processing and higher dynamic range data sets.

A Hybrid Shared-Memory Parallel Max-Tree Algorithm for Extreme Dynamic-Range Images.

Max-trees, or component trees, are graph structures that represent the connected components of an image in a hierarchical way. Nowadays, many application fields rely on images with high-dynamic range or floating point values. Efficient sequential algorithms exist to build trees and compute attributes for images of any bit depth.

Automatic Cobb angle determination from radiographic images.

Study Design: Automatic measurement of Cobb angle in patients with scoliosis.

Objective: To test the accuracy of an automatic Cobb angle determination method from frontal radiographical images.

Summary Of Background Data: Thirty-six frontal radiographical images of patients with scoliosis.

Hyperconnected attribute filters based on k-flat zones.

In this paper, we present a new method for attribute filtering, combining contrast and structural information. Using hyperconnectivity based on k-flat zones, we improve the ability of attribute filters to retain internal details in detected objects. Simultaneously, we improve the suppression of small, unwanted detail in the background.

Reproducibility of standing posture for X-ray radiography: a feasibility study of the BalancAid with healthy young subjects.

Unreliable spinal X-ray radiography measurement due to standing postural variability can be minimized by using positional supports. In this study, we introduce a balancing device, named BalancAid, to position the patients in a reproducible position during spinal X-ray radiography. This study aimed to investigate the performance of healthy young subjects' standing posture on the BalancAid compared to standing on the ground mimicking the standard X-rays posture in producing a reproducible posture for the spinal X-ray radiography.

A framework for human spine imaging using a freehand 3D ultrasound system.

The use of 3D ultrasound imaging to follow the progression of scoliosis, i.e., a 3D deformation of the spine, is described.

Concurrent computation of attribute filters on shared memory parallel machines.

Morphological attribute filters have not previously been parallelized, mainly because they are both global and non-separable. We propose a parallel algorithm that achieves efficient parallelism for a large class of attribute filters, including attribute openings, closings, thinnings and thickenings, based on Salembier's Max-Trees and Min-trees. The image or volume is first partitioned in multiple slices.

Efficient 2-D grayscale morphological transformations with arbitrary flat structuring elements.

An efficient algorithm is presented for the computation of grayscale morphological operations with arbitrary 2-D flat structuring elements (S.E.).

Volumetric attribute filtering and interactive visualization using the Max-Tree representation.

The Max-Tree designed for morphological attribute filtering in image processing, is a data structure in which the nodes represent connected components for all threshold levels in a data set. Attribute filters compute some attribute describing the shape or size of each connected component and then decide which components to keep or to discard. In this paper, we augment the basic Max-Tree data structure such that interactive volumetric filtering and visualization becomes possible.

Mask-based second-generation connectivity and attribute filters.

Connected filters are edge-preserving morphological operators, which rely on a notion of connectivity. This is usually the standard 4 and 8-connectivity, which is often too rigid since it cannot model generalized groupings such as object clusters or partitions. In the set-theoretical framework of connectivity, these groupings are modeled by the more general second-generation connectivity.

Connected shape-size pattern spectra for rotation and scale-invariant classification of gray-scale images.

In this paper, we describe a multiscale and multishape morphological method for pattern-based analysis and classification of gray-scale images using connected operators. Compared with existing methods, which use structuring elements, our method has three advantages. First, in our method, the time needed for computing pattern spectra does not depend on the number of scales or shapes used, i.

Shape representation and recognition through morphological curvature scale spaces.

A multiscale, morphological method for the purpose of shape-based object recognition is presented. A connected operator similar to the morphological hat-transform is defined, and two scale-space representations are built, using the curvature function as the underlying one-dimensional signal. Each peak and valley of the curvature is extracted and described by its maximum and average heights and by its extent and represents an entry in the top or bottom hat-transform scale spaces.

CPM: a deformable model for shape recovery and segmentation based on charged particles.

A novel, physically motivated deformable model for shape recovery and segmentation is presented. The model, referred to as the charged-particle model (CPM), is inspired by classical electrodynamics and is based on a simulation of charged particles moving in an electrostatic field. The charges are attracted towards the contours of the objects of interest by an electrostatic field, whose sources are computed based on the gradient-magnitude image.

Automatic segmentation of diatom images for classification.

A general framework for automatic segmentation of diatom images is presented. This segmentation is a critical first step in contour-based methods for automatic identification of diatoms by computerized image analysis. We review existing results, adapt popular segmentation methods to this difficult problem, and finally develop a method that substantially improves existing results.

Model intestinal microflora in computer simulation: a simulation and modeling package for host-microflora interactions.

The ecology of the human intestinal microflora and its interaction with the host are poorly understood. Though more and more data are being acquired, in part using modern molecular methods, development of a quantitative theory has not kept pace with this increase in observing power. This is in part due to the complexity of the system and to the lack of simulation environments in which to test what the ecological effect of a hypothetical mechanism of interaction would be, before resorting to laboratory experiments.