Publications by authors named "Michael Danziger"

Background: Microglia have been implicated as a key aspect of the pathology of Alzheimer's disease (AD). However, high microglial heterogeneities, including disease-associated microglia (DAM), tau microglia (tau-pathology related), and neuroinflammation-like microglia (NIM), hinder the development of microglia-targeted treatment.

Method: In this study, we integrated ∼0.

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Article Synopsis
  • High microglial diversity complicates the creation of targeted treatments for Alzheimer's disease (AD).
  • A comprehensive analysis of RNA-sequencing data revealed specific microglial subtypes associated with AD and identified potential drug targets, including microglial transition networks.
  • The study highlights ketorolac as a promising anti-inflammatory treatment for AD, showing its association with lower AD incidence in patient databases.
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Tubulin plays a fundamental role in cellular function and as the subject for microtubule-active agents in the treatment of ovarian cancer. Microtubule-binding proteins (e.g.

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Microtubules are dynamic polymers composed of α- and β-tubulin heterodimers. Microtubules are universally conserved among eukaryotes and participate in nearly every cellular process, including intracellular trafficking, replication, polarity, cytoskeletal shape, and motility. Due to their fundamental role in mitosis, they represent a classic target of anti-cancer therapy.

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The understanding of recovery processes in power distribution grids is limited by the lack of realistic outage data, especially large-scale blackout datasets. By analyzing data from three electrical companies across the United States, we find that the recovery duration of an outage is connected with the downtime of its nearby outages and blackout intensity (defined as the peak number of outages during a blackout), but is independent of the number of customers affected. We present a cluster-based recovery framework to analytically characterize the dependence between outages, and interpret the dominant role blackout intensity plays in recovery.

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The increased complexity of infrastructure systems has resulted in critical interdependencies between multiple networks-communication systems require electricity, while the normal functioning of the power grid relies on communication systems. These interdependencies have inspired an extensive literature on coupled multilayer networks, assuming a hard interdependence, where a component failure in one network causes failures in the other network, resulting in a cascade of failures across multiple systems. While empirical evidence of such hard failures is limited, the repair and recovery of a network requires resources typically supplied by other networks, resulting in documented interdependencies induced by the recovery process.

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Health, disease, and mortality vary greatly at the county level, and there are strong geographical trends of disease in the United States. Healthcare is and has been a top priority for voters in the U.S.

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Coupling between networks is widely prevalent in real systems and has dramatic effects on their resilience and functional properties. However, current theoretical models tend to assume homogeneous coupling where all the various subcomponents interact with one another, whereas real-world systems tend to have various different coupling patterns. We develop two frameworks to explore the resilience of such modular networks, including specific deterministic coupling patterns and coupling patterns where specific subnetworks are connected randomly.

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The divergence of the correlation length ξ at criticality is an important phenomenon of percolation in two-dimensional systems. Substantial speed-ups to the calculation of the percolation threshold and component distribution have been achieved by utilizing disjoint sets, but existing algorithms of this sort cannot measure the correlation length. Here we utilize the parallel axis theorem to track the correlation length as nodes are added to the system, allowing us to utilize disjoint sets to measure ξ for the entire percolation process with arbitrary precision in a single sweep.

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We study a spatial network model with exponentially distributed link lengths on an underlying grid of points, undergoing a structural crossover from a random, Erdős-Rényi graph, to a d-dimensional lattice at the characteristic interaction range ζ. We find that, whilst far from the percolation threshold the random part of the giant component scales linearly with ζ, close to criticality it extends in space until the universal length scale ζ^{6/(6-d)}, for d<6, before crossing over to the spatial one. We demonstrate the universal behavior of the spatiotemporal scales characterizing this critical stretching phenomenon of mean-field regimes in percolation and in dynamical processes on d=2 networks, and we discuss its general implications to real-world phenomena, such as neural activation, traffic flows or epidemic spreading.

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Rifamycin antibiotics (Rifs) target bacterial RNA polymerases (RNAPs) and are widely used to treat infections including tuberculosis. The utility of these compounds is threatened by the increasing incidence of resistance (Rif). As resistance mechanisms found in clinical settings may also occur in natural environments, here we postulated that bacteria could have evolved to produce rifamycin congeners active against clinically relevant resistance phenotypes.

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Many real world networks have groups of similar nodes which are vulnerable to the same failure or adversary. Nodes can be colored in such a way that colors encode the shared vulnerabilities. Using multiple paths to avoid these vulnerabilities can greatly improve network robustness, if such paths exist.

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Explosive synchronization has recently been reported in a system of adaptively coupled Kuramoto oscillators, without any conditions on the frequency or degree of the nodes. Here, we find that, in fact, the explosive phase coexists with the standard phase of the Kuramoto oscillators. We determine this by extending the mean-field theory of adaptively coupled oscillators with full coupling to the case with partial coupling of a fraction f.

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Many real world complex systems such as critical infrastructure networks are embedded in space and their components may depend on one another to function. They are also susceptible to geographically localized damage caused by malicious attacks or natural disasters. Here, we study a general model of spatially embedded networks with dependencies under localized attacks.

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Article Synopsis
  • Thermus thermophilus is a highly heat-resistant bacterium used in genetic research, especially for studying thermophiles due to its ease of genetic manipulation.
  • A method is introduced for creating precise genetic changes using a counterselectable marker that makes the bacteria sensitive to a specific chemical, enabling the removal of antibiotic resistance markers.
  • The study demonstrates the effectiveness of this technique by successfully making targeted mutations in key genes and identifying large deletions in its plasmid, showcasing its potential for genome engineering.
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We present analytic and numeric results for percolation in a network formed of interdependent spatially embedded networks. We show results for a treelike and a random regular network of networks each with (i) unconstrained dependency links and (ii) dependency links restricted to a maximum Euclidean length r. Analytic results are given for each network of networks with spatially unconstrained dependency links and compared to simulations.

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