Publications by authors named "Matthew J Irby"

Disease resistance genes in livestock provide health benefits to animals and opportunities for farmers to meet the growing demand for affordable, high-quality protein. Previously, researchers used gene editing to modify the porcine CD163 gene and demonstrated resistance to a harmful virus that causes porcine reproductive and respiratory syndrome (PRRS). To maximize potential benefits, this disease resistance trait needs to be present in commercially relevant breeding populations for multiplication and distribution of pigs.

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Allogeneic chimeric antigen receptor (CAR) T cell therapies hold the potential to overcome many of the challenges associated with patient-derived (autologous) CAR T cells. Key considerations in the development of allogeneic CAR T cell therapies include prevention of graft-vs-host disease (GvHD) and suppression of allograft rejection. Here, we describe preclinical data supporting the ongoing first-in-human clinical study, the CaMMouflage trial (NCT05722418), evaluating CB-011 in patients with relapsed/refractory multiple myeloma.

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Article Synopsis
  • The Cas9 nuclease's targeting ability relies on its guide RNA's 20-nucleotide sequence, but it can accidentally bind to similar off-target DNA sequences, which is a concern for clinical safety.
  • Crystallography studies show that Cas9 can form various noncanonical base-pairing interactions, allowing it to cleave off-target DNA, often through mechanisms like base skipping instead of typical RNA bulges.
  • Understanding these structural interactions enhances our knowledge about Cas9's off-target behavior, aiding in the better design of guide RNAs and predicting potential off-target effects.
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The off-target activity of the CRISPR-associated nuclease Cas9 is a potential concern for therapeutic genome editing applications. Although high-fidelity Cas9 variants have been engineered, they exhibit varying efficiencies and have residual off-target effects, limiting their applicability. Here, we show that CRISPR hybrid RNA-DNA (chRDNA) guides provide an effective approach to increase Cas9 specificity while preserving on-target editing activity.

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Type I CRISPR-Cas systems are the most abundant adaptive immune systems in bacteria and archaea. Target interference relies on a multi-subunit, RNA-guided complex called Cascade, which recruits a trans-acting helicase-nuclease, Cas3, for target degradation. Type I systems have rarely been used for eukaryotic genome engineering applications owing to the relative difficulty of heterologous expression of the multicomponent Cascade complex.

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