Publications by authors named "Matjaz Perc"

Spatial coherence resonance in a spatially extended system that is locally modeled by Hodgkin-Huxley (HH) neurons is studied in this paper. We focus on the ability of additive temporally and spatially uncorrelated Gaussian noise to extract a particular spatial frequency of excitatory waves in the medium, whereby examining the impact of diffusive and small-world network topology that determines the interactions amongst coupled HH neurons. We show that there exists an intermediate noise intensity that is able to extract a characteristic spatial frequency of the system in a resonant manner provided the latter is diffusively coupled, thus indicating the existence of spatial coherence resonance.

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The diversity in wealth and social status is present not only among humans, but throughout the animal world. We account for this observation by generating random variables that determine the social diversity of players engaging in the prisoner's dilemma game. Here the term social diversity is used to address extrinsic factors that determine the mapping of game payoffs to individual fitness.

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Stochastic resonance on excitable small-world networks via a pacemaker.

Phys Rev E Stat Nonlin Soft Matter Phys

December 2007

We show that the correlation between the frequency of subthreshold pacemaker activity and the response of an excitable array is resonantly dependent on the intensity of additive spatiotemporal noise. Thereby, the effect of the underlying network, defining the interactions among excitable units, largely depends on the coupling strength. Only for intermediate coupling strengths is the small world property able to enhance the stochastic resonance, whereas for smaller and larger couplings the impact of the transition from diffusive to random networks is less profound.

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Nonlinear oscillatory systems, playing a major role in biology, do not exhibit harmonic oscillations. Therefore, one might assume that the average value of any of their oscillating variables is unequal to the steady-state value. For a number of mathematical models of calcium oscillations (e.

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In many non-excitable eukaryotic cells, including hepatocytes, Ca(2+) oscillations play a key role in intra- and intercellular signalling, thus regulating many cellular processes from fertilisation to death. Therefore, understanding the mechanisms underlying these oscillations, and consequently understanding how they may be regulated, is of great interest. In this paper, we study the influence of reduced Ca(2+) plasma membrane efflux on Ca(2+) oscillations in hepatocytes.

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Calcium has been established as a key messenger in both intra- and intercellular signaling. Experimentally observed intracellular calcium responses to different agonists show a variety of behaviors from simple spiking to complex oscillatory regimes. Here we study typical experimental traces of calcium oscillations in hepatocytes obtained in response to phenylephrine and ATP.

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We show that chaotic states situated in the proximity of periodic windows in bifurcation diagrams are eligible for the observation of coherence resonance. In particular, additive Gaussian noise of appropriate intensity can enhance the temporal order in such chaotic states in a resonant manner. Results obtained for the logistic map and the Lorenz equations suggest that the presented mechanism of coherence resonance is valid beyond particularities of individual systems.

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We use nonlinear time series analysis methods to analyse the dynamics of the sound-producing apparatus of the katydid Neoconocephalus robustus. We capture the dynamics by analysing a recording of the singing activity. First, we reconstruct the phase space from the sound recording and test it against determinism and stationarity.

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We study a six-species Lotka-Volterra-type system on different two-dimensional lattices when each species has two superior and two inferior partners. The invasion rates from predator sites to a randomly chosen neighboring prey site depend on the predator-prey pair, whereby cyclic symmetries within the two three-species defensive alliances are conserved. Monte Carlo simulations reveal an unexpected nonmonotonous dependence of alliance survival on the difference of alliance-specific invasion rates.

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We show that in a spatially extended excitable medium, presently modelled with diffusively coupled FitzHugh-Nagumo neurons, internal stochasticity is able to extract a characteristic spatial frequency of waves on the spatial grid. Internal noise is introduced via a stochastic simulation method and is the only agent acting on the system. Remarkably, the spatial periodicity is best pronounced at an intermediate level of internal stochasticity.

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We study the impact of stochastic payoff variations with different distributions on the evolution of cooperation in the spatial prisoner's dilemma game. We find that Gaussian-distributed payoff variations are most successful in promoting cooperation irrespective of the temptation to defect. In particular, the facilitative effect of noise on the evolution of cooperation decreases steadily as the frequency of rare events increases.

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A significant proportion of patients with ventricular fibrillation (VF) can only be defibrillated after a period of chest compressions and ventilation before the defibrillation attempt. In these patients, unsuccessful defibrillations increase the duration of heart arrest and reduce the possibility of a successful resuscitation, which could be avoided if a reliable prediction for the success of defibrillation could be made. A new method is presented for estimating the irregularity in very short electrocardiographic (ECG) recordings that enables the prediction of a successful defibrillation in patients with VF.

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Minimal model for spatial coherence resonance.

Phys Rev E Stat Nonlin Soft Matter Phys

June 2006

We show that a planar medium, locally modeled by a simple one-dimensional excitable system with a piece-wise linear potential, can serve as a minimal model for spatial coherence resonance. Via an analytical treatment of the spatially extended system, we derive the dependence of the resonant wave number on several crucial system parameters, ranging from the diffusion coefficient to the local excursion time of constitutive excitable units. Thus, we provide vital insights into mechanisms that enable the emergence of exclusively noise-induced spatial periodicity in excitable media.

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Calcium oscillations regulate several cellular processes by activating particular proteins. Most theoretical studies focused on the idealized situation of infinitely long oscillations. Here we analyze information transfer by time-limited calcium spike trains.

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We show by mathematical modelling that a two-level protein cascade can act as a band-pass filter for time-limited oscillations. The band-pass filters are then combined into a network of three-level signalling cascades that by filtering the frequency of time-limited oscillations selectively switches cellular processes on and off. The physiological relevance for the selective regulation of cellular processes is demonstrated for the case of regulation by time-limited calcium oscillations.

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Spatial coherence resonance in excitable media.

Phys Rev E Stat Nonlin Soft Matter Phys

July 2005

We study the phenomenon of spatial coherence resonance in a two-dimensional model of excitable media with FitzHugh-Nagumo local dynamics. In particular, we show that there exists an optimal level of additive noise for which an inherent spatial scale of the excitable media is best pronounced. We argue that the observed phenomenon occurs due to the existence of a noise robust excursion time that is characteristic for the local dynamics whereby the diffusion constant, representing the rate of diffusive spread, determines the actual resonant spatial frequency.

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We study the amplification of information transfer in excitable systems. We show that excitable systems residing in a steady state near a bifurcation point to complex oscillatory behavior incorporate several frequencies that can be exploited for a resonant amplification of information transfer. In particular, for excitable neurons that reside in a steady state near a bifurcation point to elliptic bursting oscillations, we show that in addition to the resonant frequency of damped oscillations around the stable focus, another frequency exists that resonantly enhances large amplitude bursts and thus amplifies the information transfer in the system.

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A method for controlling unstable periodic orbits (UPOs) that have not been controllable before is presented. The method is based on detecting UPOs that are situated outside the skeleton of a chaotic attractor. The main idea is to exploit flexible parts of the attractor, which under weak external perturbations allow variable excursions of the trajectory away from its originally determined path.

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Synchronised signal transduction between cells is crucial, since it assures fast and immutable information processing, which is vital for flawless functioning of living organisms. The question arises how to recognise the ability of a cell to be easily coupled with other cells. In the present paper, we investigate the system properties that determine best coupling abilities and assure the most efficient signal transduction between cells.

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Sensitivity and flexibility are important properties of biological systems. These properties are here investigated for intracellular calcium oscillations. For a particular model, we comparatively investigate sensitivity and flexibility of regular and chaotic Ca(2+) oscillations.

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