Publications by authors named "Mathias Ziegler"

The coenzyme NAD is consumed by signalling enzymes, including poly-ADP-ribosyltransferases (PARPs) and sirtuins. Ageing is associated with a decrease in cellular NAD levels, but how cells cope with persistently decreased NAD concentrations is unclear. Here, we show that subcellular NAD pools are interconnected, with mitochondria acting as a rheostat to maintain NAD levels upon excessive consumption.

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Nicotinamide adenine dinucleotide, in its oxidized (NAD) and reduced (NADH) forms, is a reduction-oxidation (redox) co-factor and substrate for signalling enzymes that have essential roles in metabolism. The recognition that NAD levels fall in response to stress and can be readily replenished through supplementation has fostered great interest in the potential benefits of increasing or restoring NAD levels in humans to prevent or delay diseases and degenerative processes. However, much about the biology of NAD and related molecules remains poorly understood.

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Article Synopsis
  • Mitochondrial diseases cause neuronal death and depletion of mitochondrial DNA (mtDNA), with astrocytes potentially playing a damaging role in neurodegeneration.
  • Research using induced pluripotent stem cells (iPSCs) from patients with POLG mutations showed that the resulting astrocytes experienced significant mitochondrial dysfunction and developed a toxic phenotype.
  • When these dysfunctioning astrocytes interacted with neurons, they induced neuronal death, highlighting a novel toxic contribution of astrocytes to the progression of POLG-related diseases.
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Tuberculosis necrotizing toxin (TNT) is a protein domain discovered on the outer membrane of Mycobacterium tuberculosis (Mtb), and the fungal pathogen Aspergillus fumigatus. TNT domains have pure NAD(P) hydrolytic activity, setting them apart from other NAD-cleaving domains such as ADP-ribosyl cyclase and Toll/interleukin-1 receptor homology (TIR) domains which form a wider set of products. Importantly, the Mtb TNT domain has been shown to be involved in immune evasion via depletion of the intracellular NAD pool of macrophages.

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Nicotinamide adenine dinucleotide (NAD) is an essential molecule in all kingdoms of life, mediating energy metabolism and cellular signaling. Recently, a new class of highly active fungal surface NADases was discovered. The enzyme from the opportunistic human pathogen was thoroughly characterized.

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SLC25A51 is a member of the mitochondrial carrier family (MCF) but lacks key residues that contribute to the mechanism of other nucleotide MCF transporters. Thus, how SLC25A51 transports NAD across the inner mitochondrial membrane remains unclear. To elucidate its mechanism, we use Molecular Dynamics simulations to reconstitute SLC25A51 homology models into lipid bilayers and to generate hypotheses to test.

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NAD homeostasis in mammals requires the salvage of nicotinamide (Nam), which is cleaved from NAD by sirtuins, PARPs, and other NAD-dependent signaling enzymes. Nam phosphoribosyltransferase (NAMPT) catalyzes the rate-limiting step in vitamin B3 salvage, whereby Nam reacts with phosphoribosyl pyrophosphate (PRPP) to form nicotinamide mononucleotide. NAMPT has a high affinity towards Nam, which is further enhanced by autophosphorylation of His247.

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Article Synopsis
  • * Using an induced pluripotent stem cell (iPSC) model, researchers discovered that compound heterozygous neural stem cells (NSCs) showed greater mitochondrial dysfunction than homozygous NSCs, indicated by issues like reduced ATP production and increased levels of reactive oxygen species (ROS).
  • * The study's findings highlight significant downregulation of key metabolic pathways in compound heterozygous NSCs, suggesting this iPSC model could aid in better understanding the relationship between genotypes and disease phenotypes in mitochondrial disorders, potentially
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In this work, we present a novel approach to photothermal super resolution based thermographic resolution of internal defects using two-dimensional pixel pattern-based active photothermal laser heating in conjunction with subsequent numerical reconstruction to achieve a high-resolution reconstruction of internal defect structures. With the proposed adoption of pixelated patterns generated using laser coupled high-power DLP projector technology the complexity for achieving true two-dimensional super resolution can be dramatically reduced taking a crucial step forward towards widespread practical viability. Furthermore, based on the latest developments in high-power DLP projectors, we present their first application for structured pulsed thermographic inspection of macroscopic metal samples.

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Nicotinamide riboside (NR) is an effective precursor of nicotinamide adenine dinucleotide (NAD) in human and animal cells. NR supplementation can increase the level of NAD in various tissues and thereby improve physiological functions that are weakened or lost in experimental models of aging or various human pathologies. However, there are also reports questioning the efficacy of NR supplementation.

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Block-sparse regularization is already well known in active thermal imaging and is used for multiple-measurement-based inverse problems. The main bottleneck of this method is the choice of regularization parameters which differs for each experiment. We show the benefits of using a learned block iterative shrinkage thresholding algorithm (LBISTA) that is able to learn the choice of regularization parameters, without the need to manually select them.

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Bacteria use two alternative pathways to synthesize nicotinamide adenine dinucleotide (NAD) from nicotinamide (Nam). A short, two-step route proceeds through nicotinamide mononucleotide (NMN) formation, whereas the other pathway, a four-step route, includes the deamidation of Nam and the reamidation of nicotinic acid adenine dinucleotide (NAAD) to NAD. In addition to having twice as many enzymatic steps, the four-step route appears energetically unfavourable, because the amidation of NAAD includes the cleavage of ATP to AMP.

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Article Synopsis
  • Embryonic stem cells (ESCs) and induced pluripotent stem cells (iPSCs) differ in origin, with ESCs coming from pre-implanted embryos and iPSCs being reprogrammed from somatic cells, but both are crucial for studying human neurological development.
  • The research compares mitochondrial function and mitochondrial DNA (mtDNA) in ESCs and iPSCs across three developmental stages: pluripotent, neural progenitor, and astrocyte, revealing key differences in mitochondrial activity during differentiation.
  • Findings indicate that while ESCs and iPSCs are similar at the pluripotent stage, iPSC-derived neural stem cells have lower ATP production than ESC-derived counterparts, whereas iPSC-derived astrocy
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Article Synopsis
  • Mutations in mitochondrial genes result in significant alterations in mitochondrial functions, affecting neural stem cells (NSCs) and their differentiation into neurons and astrocytes.
  • In research comparing POLG-mutated and control stem cells, it was found that while overall mitochondrial changes were similar, key processes like mtDNA replication and mitochondrial respiratory chain complex I did not function properly in the mutated cells.
  • Specifically, the study noted that POLG mutations hindered the expected increases in mitochondrial membrane potential and ATP production during the differentiation of neuronal cells, while astrocyte differentiation remained unaffected, indicating a complex relationship between mutations and mitochondrial remodeling in early neural development.
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We conducted a double-blinded phase I clinical trial to establish whether nicotinamide adenine dinucleotide (NAD) replenishment therapy, via oral intake of nicotinamide riboside (NR), is safe, augments cerebral NAD levels, and impacts cerebral metabolism in Parkinson's disease (PD). Thirty newly diagnosed, treatment-naive patients received 1,000 mg NR or placebo for 30 days. NR treatment was well tolerated and led to a significant, but variable, increase in cerebral NAD levels-measured by phosphorous magnetic resonance spectroscopy-and related metabolites in the cerebrospinal fluid.

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  • Stable isotope labeling and high-resolution mass spectrometry are essential for studying metabolite and protein modification dynamics, but isotopologue correction is necessary for accurate data analysis.
  • While this correction is well-established in metabolomics, it’s less recognized in proteomics, which has led to a lack of suitable tools for protein data analysis.
  • The newly developed tool, PICor, addresses this gap by providing effective isotopologue correction specifically for complex isotope labeling experiments, and its importance is highlighted through an example of histone acetylation.
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Histone acetylation is an important, reversible post-translational protein modification and a hallmark of epigenetic regulation. However, little is known about the dynamics of this process, due to the lack of analytical methods that can capture site-specific acetylation and deacetylation reactions. We present a new approach that combines metabolic and chemical labeling (CoMetChem) using uniformly 13C-labeled glucose and stable isotope-labeled acetic anhydride.

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Nicotinamide adenine dinucleotide (NAD) is a vital coenzyme in redox reactions. NAD is also important in cellular signalling as it is consumed by PARPs, SARM1, sirtuins and CD38. Cellular NAD levels regulate several essential processes including DNA repair, immune cell function, senescence, and chromatin remodelling.

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It has recently been demonstrated that the rat poison vacor interferes with mammalian NAD metabolism, because it acts as a nicotinamide analog and is converted by enzymes of the NAD salvage pathway. Thereby, vacor is transformed into the NAD analog vacor adenine dinucleotide (VAD), a molecule that causes cell toxicity. Therefore, vacor may potentially be exploited to kill cancer cells.

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Poly(ADP-ribose) polymerase (PARP) enzymes initiate (mt)DNA repair mechanisms and use nicotinamide adenine dinucleotide (NAD) as energy source. Prolonged PARP activity can drain cellular NAD reserves, leading to de-regulation of important molecular processes. Here, we provide evidence of a pathophysiological mechanism that connects mtDNA damage to cardiac dysfunction via reduced NAD levels and loss of mitochondrial function and communication.

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ADP-ribosylation, a modification of proteins, nucleic acids, and metabolites, confers broad functions, including roles in stress responses elicited, for example, by DNA damage and viral infection and is involved in intra- and extracellular signaling, chromatin and transcriptional regulation, protein biosynthesis, and cell death. ADP-ribosylation is catalyzed by ADP-ribosyltransferases (ARTs), which transfer ADP-ribose from NAD onto substrates. The modification, which occurs as mono- or poly-ADP-ribosylation, is reversible due to the action of different ADP-ribosylhydrolases.

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Subcellular compartmentation is a fundamental property of eukaryotic cells. Communication and metabolic and regulatory interconnectivity between organelles require that solutes can be transported across their surrounding membranes. Indeed, in mammals, there are hundreds of genes encoding solute carriers (SLCs) which mediate the selective transport of molecules such as nucleotides, amino acids, and sugars across biological membranes.

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Nicotinamide adenine dinucleotide (NAD) is a key molecule in cellular bioenergetics and signalling. Various bacterial pathogens release NADase enzymes into the host cell that deplete the host's NAD pool, thereby causing rapid cell death. Here, we report the identification of NADases on the surface of fungi such as the pathogen Aspergillus fumigatus and the saprophyte Neurospora crassa.

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Nicotinamide riboside (NR), a new form of vitamin B3, is an effective precursor of nicotinamide adenine dinucleotide (NAD) in human and animal cells. The introduction of NR into the body effectively increases the level of intracellular NAD and thereby restores physiological functions that are weakened or lost in experimental models of aging and various pathologies. Despite the active use of NR in applied biomedicine, the mechanism of its transport into mammalian cells is currently not understood.

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