Publications by authors named "Masao Doi"

Intracrinology-wherein hormones are synthesized in the organ where they exert their effect without release into circulation-has been described. However, molecular mechanisms of hormone deactivation within intracrine tissue are still largely unknown. The meibomian glands in the eyelids produce oil (meibum) to the ocular surface to prevent dehydration (dry eye).

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  • DREADDs are advanced receptors that let scientists control neuron activity in living organisms, making it easier to study brain functions.
  • The newly developed miniD and miniD receptors are smaller versions of existing DREADDs, which help in both activating and inhibiting neuron activity.
  • Researchers successfully used a single viral vector to deliver these mini receptors, allowing them to manipulate brain activity effectively in monkeys, potentially enhancing research in brain regulation and behavior.
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  • The circadian clock significantly influences body temperature fluctuations, maintaining energy balance between day and night.
  • Homothermic animals experience daily temperature changes of 1-3 °C that help synchronize their internal biological clocks, while poikilotherms actively seek their preferred temperatures based on their internal timing mechanisms.
  • Both flies and mice use similar molecular pathways, including calcitonin receptors in specific brain clock neurons, to regulate their body temperature rhythms during active periods.
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  • Ribosome profiling is a technique that helps study protein synthesis but faces issues like contamination and measuring ribosome numbers in transcripts.
  • The authors introduce "Ribo-FilterOut" to separate ribosome footprints from subunits and "Ribo-Calibration" to accurately measure ribosome levels using defined mRNA-ribosome complexes.
  • This new method allows for genome-wide analysis of ribosome allocation and translation rates across different conditions, such as heat shock and aging.
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  • The study investigates unknown drug interactions focusing on the role of drug-metabolizing CYP enzymes, specifically CYP3A4 and CYP1A2, using human HepaRG cells.* -
  • Rifampicin and omeprazole were found to induce CYP3A4 and CYP1A2 at the mRNA and protein levels, but omeprazole unexpectedly did not increase CYP3A4 protein despite inducing its mRNA.* -
  • The findings emphasize the need to expand drug-drug interaction assessments to consider post-translational regulation of CYP enzyme expression, in addition to traditional methods.*
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A sheet of glassy polymers placed in a solvent shows swelling behaviors quite different from that of soft polymers (rubbers and gels). (1) Non-Fickian diffusion (called case II diffusion): As solvent permeates into the sample, a sharp front is created between the swollen part and the glassy part, and it moves toward the center at constant speed. (2) Nonmonotonous swelling: The thickness of the sample first increases and then decreases toward the equilibrium value.

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  • Temperature influences the core clock gene Per2, which is crucial for aligning the circadian clock with body temperature cycles.
  • Previous research indicated that the PI3K signaling pathway plays a role in Per2 protein expression during warm temperature shifts, but the complete signaling mechanisms are not fully understood.
  • This study identifies eIF2α kinases, specifically PKR and PERK, as new mediators of Per2 expression in response to temperature changes, functioning as upstream regulators of PI3K rather than via eIF2α.
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Key Points: d-Alanine affects the circadian clock to regulate gluconeogenesis in the kidney. d-Alanine itself has a clear intrinsic circadian rhythm, which is regulated by urinary excretion, and acts on the circadian rhythm. d-Alanine is a signal activator for circadian rhythm and gluconeogenesis through circadian transcriptional network.

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We consider a cylinder immersed in viscous fluid moving near a flat substrate covered by an incompressible viscoelastic fluid layer, and study the effect of the fluid viscoelasticity on the lift force exerted on the cylinder. The lift force is zero when the viscoelastic layer is not deformed, but becomes non-zero when it is deformed. We calculate the lift force by considering both the tangential stress and the normal stress applied at the surface of the viscoelastic layer.

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  • The circadian clock is a system that helps regulate biological processes in a roughly 24-hour cycle, primarily influenced by light and other environmental cues.
  • In mammals, the suprachiasmatic nucleus (SCN) in the brain acts as the central clock, coordinating the timing of various peripheral clocks in the body for better control of behavior, metabolism, and physiology.
  • The study investigates how quickly these clocks adjust to sudden changes in the light-dark cycle, finding that arginine vasopressin pathways are crucial for maintaining clock stability both in the SCN and the anterior pituitary gland.
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Body temperature in homeothermic animals does not remain constant but displays a regular circadian fluctuation within a physiological range (e.g., 35°C-38.

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We analyze the translocation process of a spherical vesicle, made of a membrane and incompressible fluid, through a hole smaller than the vesicle size, driven by pressure difference Δ. We show that such a vesicle shows certain universal characteristics, which are independent of the details of the membrane elasticity: (i) there is a critical pressure Δ below which no translocation occurs; (ii) Δ decreases to zero as the vesicle radius approaches the hole radius , satisfying the scaling relation Δ ∼ ( - ); and (iii) the translocation time τ diverges as Δ decreases to Δ, satisfying the scaling relation τ ∼ (Δ - Δ).

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Cracks are frequently observed in drying colloidal coatings. Although a rich collection of crack patterns has been reported, the systematic study on how cracks grow into the final morphology during the drying process remains elusive. In this work, we use directional drying channels with wedge-shaped edges of different angles to study the interplay of advancing consolidation fronts and propagating cracks.

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Small extracellular vesicles (sEVs) are nano-sized vesicles secreted from various cells that contain bioactive metabolites and function as key regulators for intercellular communication. sEVs modulate diverse biological and pathological processes in the body, and the amount of circulating sEVs has been reported to correlate with certain disease progression. Therefore, the identification of small molecular compounds that can control sEV production may become a novel therapeutic strategy.

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The rate at which a Brownian particle confined in a closed space escapes from the space by passing through a narrow passage is called the escape rate. The escape rate is relevant to many diffusion limited processes in polymer and colloidal systems, such as colloidal aggregation, polymerization reaction, polymer translocation through a membrane, etc. Here, we propose a variational principle to calculate the escape rate of complex molecules doing Brownian motion in a multi-dimensional phase space.

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The suprachiasmatic nucleus (SCN) is the master circadian clock in mammals and is properly entrained by environmental light cycle. However, the molecular mechanism(s) determining the magnitude of phase shift by light is still not fully understood. The orphan G-protein-coupled receptor Gpr176 is enriched in the SCN, controls the pace (period) of the circadian rhythm in behavior but is not apparently involved in the light entrainment; Gpr176 animals display a shortened circadian period in constant darkness but their phase-resetting responses to light are normal.

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We study the wetting phenomena of a soft viscoelastic solid film on a smooth and flat substrate. A poly-dimethylsiloxane (PDMS) rubber film is suspended from a stage at both ends, and the wetting behavior of the film against a glass substrate is observed while lowering the stage at a constant velocity. We find that the dynamics of the rubber-glass-air contact lines vary with the lowering velocity of the stage.

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The epidermis is the outermost layer of the skin and the body's primary barrier to external pathogens; however, the early epidermal immune response remains to be mechanistically understood. We show that the chemokine CXCL14, produced by epidermal keratinocytes, exhibits robust circadian fluctuations and initiates innate immunity. Clearance of the skin pathogen in nocturnal mice was associated with CXCL14 expression, which was high during subjective daytime and low at night.

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Using the Onsager variational principle, we study the dynamic coupling between the stress and the composition in a polymer solution. In the original derivation of the two-fluid model of Doi and Onuki the polymer stress was introduced ; therefore, a constitutive equation is required to close the equations. Based on our previous study of viscoelastic fluids with homogeneous composition, we start with a dumbbell model for the polymer, and derive all dynamic equations using the Onsager variational principle.

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Calcium signaling is pivotal to the circadian clockwork in the suprachiasmatic nucleus (SCN), particularly in rhythm entrainment to environmental light-dark cycles. Here, we show that a small G-protein Gem, an endogenous inhibitor of high-voltage-activated voltage-dependent calcium channels (VDCCs), is rapidly induced by light in SCN neurons via the calcium (Ca)-mediated CREB/CRE transcriptional pathway. Gem attenuates light-induced calcium signaling through its interaction with VDCCs.

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Plasticized poly(vinyl chloride) (PVC) is a jelly-like soft dielectric material that attracted substantial interest recently as a new type of electro-active polymers. Under electric fields of several hundred volt/mm, PVC gels undergo large deformations. These gels can be used as artificial muscles and other soft robotic devices, with striking deformation behavior that is quite different from conventional dielectric elastomers.

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We studied the dynamics of a fluid rising in a capillary tube with corners. In the cornered tube, unlike the circular tube, fluid rises with two parts, the bulk part where the entire cross-section is occupied by the fluid and the finger part where the cross-section is only partially filled. Using the Onsager principle, we derive coupled time-evolution equations for the two parts.

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A single-component droplet placed on a completely wetting substrate shows a pseudostable apparent contact angle (θ) during evaporation. We propose a simple theory to explain the phenomenon accounting for the liquid evaporation and the internal flow induced by the capillary and Marangoni effects. The theory predicts that when evaporation starts, the contact angle approaches to θ in a short time τ, remains constant for most of the time of evaporation, and finally increases rapidly when the droplet size becomes very small.

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Gas-liquid transition is generally a complex process, which involves nucleation of droplets and their growth by evaporation-condensation or collision-coalescence processes. Here, we focus on a microscopic system in which there is only one liquid droplet at most. In this case, we can develop an equilibrium theory for the formation of the droplet in the gas phase using the classical nucleation theory.

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