Computational studies of gas-phase Ca3P2 and Ca6P4.

The electronic and molecular structures of Ca3P2 and Ca6P4 are investigated using high-level ab initio methods. The lowest energy structure for Ca3P2 is found to be a Jahn-Teller distorted triplet. An excited-state singlet is found with various post HF methods; however, DFT incorrectly predicts a closed shell singlet to be the ground state.

Cluster precursors of uncapped CdS quantum dots via electroporation of synthetic liposomes. Experiments and theory.

Subnanometer size cluster precursors of uncapped CdS quantum dots were produced via the electroporation of synthetic dioleoylphosphatidylcholine (DOPC) unilamellar bilayer vesicles of mean hydrodynamic diameter Dh = 175 nm. During electroporation, Cd2+ ions are ejected from the interior compartments of the vesicles into the bulk solution where they react with S(2-) ions to form CdS monomers. The monomers adsorb on the exterior surface of the vesicles, where their spontaneous self-aggregation to (CdS)n clusters occurs on the hour and day time scale.

Equilibrium conditions in laser-desorbed plumes: thermodynamic properties of alpha-cyano-4-hydroxycinnamic acid and protonation of amino acids.

The equilibrium nature of a plume of laser desorbed material is explored through the application of a simple equilibrium model to the ion signals observed in 355 nm laser desorption/ionization mass spectra of mixtures of the MALDI matrix alpha-cyano-4-hydroxycinnamic acid (alphaCHCA) with the amino acids glycine, alanine, valine, isoleucine, and phenylalanine. In these studies it is found that there are systematic and predictable increases in the relative yield of protonated amino acid with increases in amino acid gas-phase basicity. In addition, the thermodynamic values extracted from the equilibrium plot are shown to be in good agreement with values obtained from computational investigation of plausible alphaCHCA proton donor species.

Density functional study of the structures of lead sulfide clusters (PbS)n (n = 1-9).

The structures of (PbS)n (n = 1-9) clusters are investigated with density functional theory at the B3LYP level. Various pseudopotential basis sets on lead and the 6-31+G basis set on sulfur were employed. Full geometry optimization and extensive searches of the potential energy surface were carried out for clusters with n = 1-6.

Computational study of matrix-peptide interactions in MALDI mass spectrometry: Interactions of 2,5- and 3,5-dihydroxybenzoic acid with the tripeptide valine-proline-leucine.

The mechanism of matrix-to-analyte proton transfer in matrix-assisted laser desorption and ionization mass spectrometry (MALDI-MS) has been investigated computationally by modeling the matrix-analyte interaction of potential MALDI matrixes such as 2,5-dihydroxybenzoic acid (2,5-DHB) and 3,5-DHB with the tripeptide valine-proline-leucine (VPL). A combination of molecular dynamics/simulated annealing calculations followed by density functional theory geometry optimization using a reasonably large basis set has been done on a large number of clusters in an attempt to study the ionization energy of each matrix in the cluster environment and the intracluster proton transfer from the matrix to the tripeptide. The calculations show a substantial reduction in the IP for both matrixes in their cluster environments.

Ionization energy reductions in small 2,5-dihydroxybenzoic acid-proline clusters.

The photoionization of (pro)(n)DHB (pro = proline, DHB = 2,5-dihydroxybenzoic acid, n = 0, 1, 2 or 4) clusters was studied both experimentally and computationally. Experimentally the (pro)(n)DHB clusters are generated in the gas phase by laser desorption and supersonic jet entrainment. The photoionization thresholds are then determined by the mass-selective measurement of both one- and two-color photoionization efficiency curves.

Azido derivatives of low-valent group 14 elements: synthesis, characterization, and electronic structure of [(n-Pr)2ATI]GeN3 and [(n-Pr)2ATI]SnN3 featuring heterobicyclic 10-pi-electron ring systems.

Treatment of THF solutions of [(n-Pr)2ATI]MCl (where [(n-Pr)2ATI]- = N-(n-propyl)-2-(n-propylamino)troponiminate; M = Ge and Sn) with sodium azide affords the compounds [(n-Pr)2ATI]MN3 in excellent yield. X-ray analyses revealed that these Ge(II) and Sn(II) compounds feature linear azide moieties and planar heterobicyclic C7N2M ring systems. Germanium and tin atoms adopt a pyramidal geometry.

Copper and silver complexes containing organic azide ligands: syntheses, structures, and theoretical investigation of [HB(3,5-(CF3)2Pz)3]CuNNN(1-Ad) and [HB(3,5-(CF3)2Pz)3]AgN(1-Ad)NN (where Pz = pyrazolyl and 1-Ad = 1-adamantyl).

Treatment of [HB(3,5-(CF3)2Pz)3]Na(THF) with CF3SO3Cu followed by 1-azidoadamantane affords [HB(3,5-(CF3)2Pz)3]CuNNN(1-Ad) in 65% yield. The solid state structure shows that the copper atom is coordinated to the terminal nitrogen atom (NT) of the azidoadamantane ligand. The related silver(I) adduct can be prepared in 80% yield by the treatment of [HB(3,5-(CF3)2Pz)3]Ag(THF) with 1-azidoadamantane.

Bonding preferences of C2X4-bridged bimetallic transition metal complexes of Ti, Cu, and Ag.

The bonding preference of transition metal species of general formula [(PH3)2M]2(mu-C2X4), where M = Cu or Ag and X = O, S, Se, or Te, and (Cp2Ti)2(mu-C2X4), where X = S or Se, are explored using density functional theory. The relative energies of metal binding to the bridging ligand in a dithiolene-like vs dithiocarbamate-like manner are evaluated. In all cases, the most stable structure corresponds to dithiolene-like (or side-side) bonding, consistent with the vast majority of these compounds which have been experimentally characterized.

Extension of the method of partial retention of diatomic differential overlap to second row atoms and transition metals.

The method of partial retention of diatomic differential overlap (PRDDO) has been extended to the elements through the first transition series. A minimum basis set of Slatertype orbitals is employed, with optional 3d functions on atoms in the second major row. The 3d shell for transition metal atoms is a fixed-contracted double-zeta combination of Slater orbitals.

Electron affinity of the methyl radical: Structures of CH(3) and CH(3)-.

Ab initio self-consistent field and configuration interaction calculations are presented for the methyl radical and anion. The methyl radical is shown to be planar (D(3h)), while the anion is pyramidal (C(3v)). The methyl anion is unstable with respect to the limit of CH(3) plus an electron by 2-8 kcal/mole.

A Mathematical Treatment of Rate Data Obtained in Biological Flow Systems under Nonsteady State Conditions.

The problem of determining gas exchange rates from flow system data under nonsteady state conditions is analyzed. A correction factor is presented for obtaining constant rates under nonsteady state conditions. A general formula for obtaining any rate under nonsteady state conditions is also given.

Theoretical studies of metal-phosphate interactions: interaction of Li+, Na+, K+, Be++, Mg++, and Ca++ with H2PO4- and (CH3O)2PO2-: implications for nucleic acid solvation.

Model phosphate-metal solvation complexes have been studied by ab-initio self-consistent-field techniques. The complexes studied include (RO)2PO2-(R = H or CH3) with Li+, Na+, K+, Be++, Mg++, Ca++, H2O, and Cl-. The geometries of the complexes were chosen to approximate reasonable model solvation complexes for phosphate groups in a nucleic acid environment.