The aquaculture disease network model (AquaNet-Mod): A simulation model to evaluate disease spread and controls for the salmonid industry in England and Wales.

Infectious disease causes significant mortality in wild and farmed systems, threatening biodiversity, conservation and animal welfare, as well as food security. To mitigate impacts and inform policy, tools such as mathematical models and computer simulations are valuable for predicting the potential spread and impact of disease. This paper describes the development of the Aquaculture Disease Network Model, AquaNet-Mod, and demonstrates its application to evaluating disease epidemics and the efficacy of control, using a Viral Haemorrhagic Septicaemia (VHS) case study.

Biosecurity and the ornamental fish trade: A stakeholder perspective in England.

The freshwater and marine ornamental fish industry is a primary route of hazard introduction and emergence, including aquatic animal diseases and non-native species. Prevention measures are key to reducing the risk of hazard incursion and establishment, but there is currently little understanding of the biosecurity practices and hazard responses implemented at post-border stages of the ornamental fish supply chain. This study addresses this knowledge gap, using questionnaires to collate information on actual biosecurity behaviours and hazard responses practised by ornamental fish retailers and hobbyist communities in England.

Development of a non-lethal hydrogen peroxide treatment for surveillance of Gyrodactylus salaris on trout farms and its application to testing wild salmon populations.

This study documents the development of a non-lethal sampling method to recover gyrodactylid parasites from large numbers of fish that will underpin an improved surveillance strategy for Gyrodactylus salaris. A review of published literature identified over 80 compounds that have previously been tested against gyrodactylids or closely related parasite species. Five safe and relatively fast-acting compounds were selected for testing to determine their efficiency in removing gyrodactylids from host fish in small-scale aquaria trials using three-spined stickleback infected with Gyrodactylus gasterostei as a model host-parasite system.

Model for ranking freshwater fish farms according to their risk of infection and illustration for viral haemorrhagic septicaemia.

We developed a model to calculate a quantitative risk score for individual aquaculture sites. The score indicates the risk of the site being infected with a specific fish pathogen (viral haemorrhagic septicaemia virus (VHSV); infectious haematopoietic necrosis virus, Koi herpes virus), and is intended to be used for risk ranking sites to support surveillance for demonstration of zone or member state freedom from these pathogens. The inputs to the model include a range of quantitative and qualitative estimates of risk factors organised into five risk themes (1) Live fish and egg movements; (2) Exposure via water; (3) On-site processing; (4) Short-distance mechanical transmission; (5) Distance-independent mechanical transmission.

Expert consultation on risk factors for introduction of infectious pathogens into fish farms.

An expert consultation was conducted to provide quantitative parameters required to inform risk-based surveillance of aquaculture holdings for selected infectious hazards. The hazards were four fish diseases endemic in some or several European countries: infectious salmon anaemia (ISA), viral haemorrhagic septicaemia (VHS), infectious haematopoietic necrosis (IHN), and koi herpes virus disease (KHD). Experts were asked to provide estimates for the relative importance of 5 risk themes for the hazard to be introduced into and infect susceptible fish at the destination.

Investigation of mortality in Pacific oysters associated with Ostreid herpesvirus-1 μVar in the Republic of Ireland in 2009.

High levels of mortality in Pacific oysters Crassostrea gigas in the Republic of Ireland were recorded during the summer of 2009. The new variant of Ostreid herpes 1 (OsHV-1 μVar) which first emerged in France in 2008 was identified from affected stocks. Retrospective data was collected from 70 oyster farmers through an interviewer-administered questionnaire to investigate the distribution and determinants of the mortality.

Tool for estimating the risk of anthropogenic spread of Batrachochytrium denrobatidis between water bodies.

Batrachochytrium dendrobatidis (Bd) is a chytrid fungus, which has been associated with numerous amphibian mortality events around the world. It is hypothesized that Bd was inadvertently spread through human activities. We have developed a basic risk assessment tool to better understand the potential risk of transferring Bd between water bodies through field activities, and to target disinfection strategies which reduce the risk of spreading Bd.

Stochastic simulation of live salmonid movement in England and Wales to predict potential spread of exotic pathogens.

The anthropogenic movement of live fish has been identified as the most important route for the transmission of disease between river catchments. To assist in contingency planning for exotic salmonid disease outbreaks, a stochastic model was developed to assess the potential geographic distribution of an introduced pathogen with time to first detection. The Live Fish Movement Database (a resource funded by the UK Department for Environment, Food and Rural Affairs [Defra] and managed by the Centre for Environment, Fisheries and Aquaculture Science [CEFAS] and the Environment Agency [EA]) was used to establish details of live fish movement in England and Wales.

Pair-level approximations to the spatio-temporal dynamics of epidemics on asymmetric contact networks.

The process of infection during an epidemic can be envisaged as being transmitted via a network of routes represented by a contact network. Most differential equation models of epidemics are mean-field models. These contain none of the underlying spatial structure of the contact network.