Predicting modular functions and neural coding of behavior from a synaptic wiring diagram.

A long-standing goal in neuroscience is to understand how a circuit's form influences its function. Here, we reconstruct and analyze a synaptic wiring diagram of the larval zebrafish brainstem to predict key functional properties and validate them through comparison with physiological data. We identify modules of strongly connected neurons that turn out to be specialized for different behavioral functions, the control of eye and body movements.

Synaptic weight dynamics underlying memory consolidation: Implications for learning rules, circuit organization, and circuit function.

Systems consolidation is a common feature of learning and memory systems, in which a long-term memory initially stored in one brain region becomes persistently stored in another region. We studied the dynamics of systems consolidation in simple circuit architectures with two sites of plasticity, one in an early-learning and one in a late-learning brain area. We show that the synaptic dynamics of the circuit during consolidation of an analog memory can be understood as a temporal integration process, by which transient changes in activity driven by plasticity in the early-learning area are accumulated into persistent synaptic changes at the late-learning site.

Context-dependence of deterministic and nondeterministic contributions to closed-loop steering control.

In natural circumstances, sensory systems operate in a closed loop with motor output, whereby actions shape subsequent sensory experiences. A prime example of this is the sensorimotor processing required to align one's direction of travel, or heading, with one's goal, a behavior we refer to as steering. In steering, motor outputs work to eliminate errors between the direction of heading and the goal, modifying subsequent errors in the process.

Synaptic weight dynamics underlying memory consolidation: implications for learning rules, circuit organization, and circuit function.

Unlabelled: Systems consolidation is a common feature of learning and memory systems, in which a long-term memory initially stored in one brain region becomes persistently stored in another region. We studied the dynamics of systems consolidation in simple circuit architectures with two sites of plasticity, one in an early-learning and one in a late-learning brain area. We show that the synaptic dynamics of the circuit during consolidation of an analog memory can be understood as a temporal integration process, by which transient changes in activity driven by plasticity in the early-learning area are accumulated into persistent synaptic changes at the late-learning site.

Interactions between circuit architecture and plasticity in a closed-loop cerebellar system.

Determining the sites and directions of plasticity underlying changes in neural activity and behavior is critical for understanding mechanisms of learning. Identifying such plasticity from neural recording data can be challenging due to feedback pathways that impede reasoning about cause and effect. We studied interactions between feedback, neural activity, and plasticity in the context of a closed-loop motor learning task for which there is disagreement about the loci and directions of plasticity: vestibulo-ocular reflex learning.

A Lyapunov theory demonstrating a fundamental limit on the speed of systems consolidation.

The nervous system reorganizes memories from an early site to a late site, a commonly observed feature of learning and memory systems known as systems consolidation. Previous work has suggested learning rules by which consolidation may occur. Here, we provide conditions under which such rules are guaranteed to lead to stable convergence of learning and consolidation.

Neural circuit models for evidence accumulation through choice-selective sequences.

Decision making is traditionally thought to be mediated by populations of neurons whose firing rates persistently accumulate evidence across time. However, recent decision-making experiments in rodents have observed neurons across the brain that fire sequentially as a function of spatial position or time, rather than persistently, with the subset of neurons in the sequence depending on the animal's choice. We develop two new candidate circuit models, in which evidence is encoded either in the relative firing rates of two competing chains of neurons or in the network location of a stereotyped pattern ("bump") of neural activity.

An oscillatory mechanism for multi-level storage in short-term memory.

Oscillatory activity is commonly observed during the maintenance of information in short-term memory, but its role remains unclear. Non-oscillatory models of short-term memory storage are able to encode stimulus identity through their spatial patterns of activity, but are typically limited to either an all-or-none representation of stimulus amplitude or exhibit a biologically implausible exact-tuning condition. Here we demonstrate a simple mechanism by which oscillatory input enables a circuit to generate persistent or sequential activity that encodes information not only in the spatial pattern of activity, but also in the amplitude of activity.

Cyclic structure with cellular precision in a vertebrate sensorimotor neural circuit.

Neuronal wiring diagrams reconstructed by electron microscopy pose new questions about the organization of nervous systems following the time-honored tradition of cross-species comparisons. The C. elegans connectome has been conceptualized as a sensorimotor circuit that is approximately feedforward, starting from sensory neurons proceeding to interneurons and ending with motor neurons.

Oculomotor plant and neural dynamics suggest gaze control requires integration on distributed timescales.

A fundamental principle of biological motor control is that the neural commands driving movement must conform to the response properties of the motor plants they control. In the oculomotor system, characterizations of oculomotor plant dynamics traditionally supported models in which the plant responds to neural drive to extraocular muscles on exclusively short, subsecond timescales. These models predict that the stabilization of gaze during fixations between saccades requires neural drive that approximates eye position on longer timescales and is generated through the temporal integration of brief eye velocity-encoding signals that cause saccades.

Choice-selective sequences dominate in cortical relative to thalamic inputs to NAc to support reinforcement learning.

How are actions linked with subsequent outcomes to guide choices? The nucleus accumbens, which is implicated in this process, receives glutamatergic inputs from the prelimbic cortex and midline regions of the thalamus. However, little is known about whether and how representations differ across these input pathways. By comparing these inputs during a reinforcement learning task in mice, we discovered that prelimbic cortical inputs preferentially represent actions and choices, whereas midline thalamic inputs preferentially represent cues.

Combining Microbial Culturing With Mathematical Modeling in an Introductory Course-Based Undergraduate Research Experience.

Quantitative techniques are a critical part of contemporary biology research, but students interested in biology enter college with widely varying quantitative skills and attitudes toward mathematics. Course-based undergraduate research experiences (CUREs) may be an early way to build student competency and positive attitudes. Here we describe the design, implementation, and assessment of an introductory quantitative CURE focused on halophilic microbes.

Predictors of aging out of heavy episodic drinking in emerging adults: a systematic review protocol.

Background: Heavy episodic drinking (HED) refers to alcohol consumption that exceeds the recommended threshold for a given episode and increases risk for diverse negative alcohol-related consequences. A pattern of weekly HED is most prevalent in emerging adults (i.e.

Using future-oriented expectancy associates to probe real-time variations in motivation to consume alcohol.

An extensive empirical and theoretical literature has characterized anticipatory/expectancy processes as integral to motivation, including motivation to consume alcohol. To examine whether these processes could be probed on a moment to moment basis as they activate to motivate near term drinking, we sampled future-oriented expectancy verbal associates (i.e.

Unsupervised discovery of temporal sequences in high-dimensional datasets, with applications to neuroscience.

Identifying low-dimensional features that describe large-scale neural recordings is a major challenge in neuroscience. Repeated temporal patterns (sequences) are thought to be a salient feature of neural dynamics, but are not succinctly captured by traditional dimensionality reduction techniques. Here, we describe a software toolbox-called seqNMF-with new methods for extracting informative, non-redundant, sequences from high-dimensional neural data, testing the significance of these extracted patterns, and assessing the prevalence of sequential structure in data.

Synchronization of Electrically Coupled Resonate-and-Fire Neurons.

Electrical coupling between neurons is broadly present across brain areas and is typically assumed to synchronize network activity. However, intrinsic properties of the coupled cells can complicate this simple picture. Many cell types with electrical coupling show a diversity of post-spike subthreshold fluctuations, often linked to subthreshold resonance, which are transmitted through electrical synapses in addition to action potentials.

Competing inhibition-stabilized networks in sensory and memory processing.

In simplified models of neocortical circuits, inhibition is either modeled in a feedforward manner or through mutual inhibitory interactions that provide for competition between neuronal populations. By contrast, recent work has suggested a critical role for recurrent inhibition as a negative feedback element that stabilizes otherwise unstable recurrent excitation. Here, we show how models based upon a motif of recurrently connected "E-I" pairs of excitatory and inhibitory units can be used to describe experimental observations in sensory and memory networks.

Exposure to male sexual scents (androstenone) influences women's drinking.

In a demonstration of a heretofore unknown motivational pathway for alcohol consumption, we recently showed that exposure to scents emitted by human females during the fertile phase of their menstrual cycle could increase men's drinking. The current study examined the reverse: whether exposure to male sexual scents (androstenone) would increase women's drinking. One hundred three female participants were primed with either androstenone or a control prime (plain water) camouflaged as a men's "cologne.

Population-scale organization of cerebellar granule neuron signaling during a visuomotor behavior.

Granule cells at the input layer of the cerebellum comprise over half the neurons in the human brain and are thought to be critical for learning. However, little is known about granule neuron signaling at the population scale during behavior. We used calcium imaging in awake zebrafish during optokinetic behavior to record transgenically identified granule neurons throughout a cerebellar population.

Effect of Interactions between Harvester Ants on Forager Decisions.

Harvester ant colonies adjust their foraging activity to day-to-day changes in food availability and hour-to-hour changes in environmental conditions. This collective behavior is regulated through interactions, in the form of brief antennal contacts, between outgoing foragers and returning foragers with food. Here we consider how an ant, waiting in the entrance chamber just inside the nest entrance, uses its accumulated experience of interactions to decide whether to leave the nest to forage.

Computational training for the next generation of neuroscientists.

Neuroscience research has become increasingly reliant upon quantitative and computational data analysis and modeling techniques. However, the vast majority of neuroscientists are still trained within the traditional biology curriculum, in which computational and quantitative approaches beyond elementary statistics may be given little emphasis. Here we provide the results of an informal poll of computational and other neuroscientists that sought to identify critical needs, areas for improvement, and educational resources for computational neuroscience training.

Exposure to female fertility pheromones influences men's drinking.

Research has shown that humans consciously use alcohol to encourage sexual activity. In the current study, we investigated whether decision making about alcohol use and sex can be cued outside of awareness by recently revealed sexual signaling mechanisms. Specifically, we examined if males exposed without their knowledge to pheromones emitted by fertile females would increase their alcohol consumption, presumably via neurobehavioral information pathways that link alcohol to sex and mating.

The temporal "pulse" of drinking: Tracking 5 years of binge drinking in emerging adults.

Binge drinking is associated with clinically significant individual-level and public health consequences. The topography of binge drinking may influence the emergence of consequences, but studies of topography require a higher level of temporal resolution than is typically available in epidemiological research. To address topography across the 5 "peak" years of binge drinking (18 to 23 years), we assessed daily binge drinking via successive 90-day timeline follow-back interviews of 645 young adults (resulting in almost 700,000 data points).

Spatial patterns of persistent neural activity vary with the behavioral context of short-term memory.

A short-term memory can be evoked by different inputs and control separate targets in different behavioral contexts. To address the circuit mechanisms underlying context-dependent memory function, we determined through optical imaging how memory is encoded at the whole-network level in two behavioral settings. Persistent neural activity maintaining a memory of desired eye position was imaged throughout the oculomotor integrator after saccadic or optokinetic stimulation.