Publications by authors named "Mark J Tomishima"

Human pluripotent stem cells show considerable promise for applications in regenerative medicine, including the development of cell replacement paradigms for the treatment of Parkinson's disease. Protocols have been developed to generate authentic midbrain dopamine (mDA) neurons capable of reversing dopamine-related deficits in animal models of Parkinson's disease. However, the generation of mDA neurons at clinical scale suitable for human application remains an important challenge.

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Environmental and genetic risk factors contribute to Parkinson's Disease (PD) pathogenesis and the associated midbrain dopamine (mDA) neuron loss. Here, we identify early PD pathogenic events by developing methodology that utilizes recent innovations in human pluripotent stem cells (hPSC) and chemical sensors of HSP90-incorporating chaperome networks. We show that events triggered by PD-related genetic or toxic stimuli alter the neuronal proteome, thereby altering the stress-specific chaperome networks, which produce changes detected by chemical sensors.

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Human pluripotent stem cells (PSCs) provide an unlimited cell source for cell therapies and disease modeling. Despite their enormous power, technical aspects have hampered reproducibility. Here, we describe a modification of PSC workflows that eliminates a major variable for nearly all PSC experiments: the quality and quantity of the PSC starting material.

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Cell replacement therapy in the nervous system has a rich history, with ∼40 years of research and ∼30 years of clinical experience. There is compelling evidence that appropriate cells can integrate and function in the dysfunctioning human nervous system, but the clinical results are mixed in practice. A number of factors conspire to vary patient outcome: the indication, cell source, patient selection, and team performing transplantation are all variables that can affect efficacy.

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Human pluripotent stem cells (hPSCs) provide an unlimited cell source for regenerative medicine. Hormone-producing cells are particularly suitable for cell therapy, and hypopituitarism, a defect in pituitary gland function, represents a promising therapeutic target. Previous studies have derived pituitary lineages from mouse and human ESCs using 3D organoid cultures that mimic the complex events underlying pituitary gland development in vivo.

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Neural crest (NC) cells are migratory multipotent progenitors that delaminate from the neural tube during embryonic development and give rise to various cell types in different organs. These cells are a transient embryonic cell population and therefore difficult to obtain from primary sources. Deriving NC from human pluripotent stem cells offers an alternative way to provide large-scale human NC cells for developmental and disease-related studies.

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The predominant view of pluripotency regulation proposes a stable ground state with coordinated expression of key transcription factors (TFs) that prohibit differentiation. Another perspective suggests a more complexly regulated state involving competition between multiple lineage-specifying TFs that define pluripotency. These contrasting views were developed from extensive analyses of TFs in pluripotent cells in vitro.

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MicroRNAs (miRNAs) regulate myriad biological processes; however, their role in cell fate choice is relatively unexplored. Pluripotent NT2/D1 embryonal carcinoma cells differentiate into an epithelial/smooth muscle phenotype when treated with bone morphogenetic protein-2 (BMP-2). To identify miRNAs involved in epithelial cell development, we performed miRNA profiling of NT2/D1 cells treated with BMP-2 at 6, 12, and 24 h, and on days 6 and 10.

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Reprogramming somatic cells to induced pluripotent stem cells (iPSCs) resets their identity back to an embryonic age and, thus, presents a significant hurdle for modeling late-onset disorders. In this study, we describe a strategy for inducing aging-related features in human iPSC-derived lineages and apply it to the modeling of Parkinson's disease (PD). Our approach involves expression of progerin, a truncated form of lamin A associated with premature aging.

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Article Synopsis
  • The neural crest (NC) consists of versatile cells that develop into various tissues, including components of the peripheral nervous system, skin pigmentation, the heart, and facial structure.
  • The ability of NC to differentiate into multiple cell types makes it valuable for research in embryonic development, disease modeling, and cell-based therapies using human pluripotent stem cells (hPSCs).
  • The text highlights recent techniques for effectively differentiating hPSCs into NC and details methods for guiding NC cells towards becoming melanocytes or sensory neurons.
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Fragile X syndrome (FXS) is caused by a CGG repeat expansion in the FMR1 gene that appears to occur during oogenesis and during early embryogenesis. One model proposes that repeat instability depends on the replication fork direction through the repeats such that (CNG)n hairpin-like structures form, causing DNA polymerase to stall and slip. Examining DNA replication fork progression on single DNA molecules at the endogenous FMR1 locus revealed that replication forks stall at CGG repeats in human cells.

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Article Synopsis
  • - Melanocytes, which originate from neural crest cells, play a crucial role in protecting skin from UV damage, and using pluripotent stem cell technology can help us study their development and related diseases.
  • - Exposure to specific signaling activators (WNT, BMP, and EDN3) under certain conditions can induce the formation of neural crest and melanocyte precursor cells from human embryonic stem cells.
  • - The study highlights the importance of WNT signaling in the early stages of melanocyte development and demonstrates the potential to generate pure human melanocytes from induced pluripotent stem cells, which can be used to model pigmentation disorders like Hermansky-Pudlak and Chediak-Higashi syndromes.
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  • Embryonic stem cells (ESCs) and induced pluripotent stem cells (iPSCs) are promising for regenerative medicine due to their ability to self-renew and differentiate into various cell types.
  • Research indicates that the growth properties and signaling pathways differ between mouse and human ESCs, highlighting the need for functional studies across species.
  • The transcription factor Zfx is crucial for maintaining self-renewal in human ESCs; its knockdown impairs growth, while its overexpression promotes clone formation and inhibits unwanted differentiation, showing similarities in self-renewal mechanisms between mice and humans.
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Embryonic stem cells (ESCs) represent a promising source of midbrain dopaminergic (DA) neurons for applications in Parkinson disease. However, ESC-based transplantation paradigms carry a risk of introducing inappropriate or tumorigenic cells. Cell purification before transplantation may alleviate these concerns and enable identification of the specific DA neuron stage most suitable for cell therapy.

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Endothelial cells line blood vessels and coordinate many aspects of vascular biology. More recent work has shown that endothelial cells provide a key niche in vivo for neural stem cells. In vitro, endothelial cells secrete a factor that expands neural stem cells while inhibiting their differentiation.

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Human embryonic stem cells (hESCs) and the related induced pluripotent stem cells (hiPSCs) have attracted considerable attention since they can provide an unlimited source of many different tissue types. One challenge of using pluripotent cells is directing their broad differentiation potential into one specific tissue or cell fate. The cell fate choices of extraembryonic, endoderm, mesoderm, and ectoderm (including neural) lineages represent the earliest decisions.

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Article Synopsis
  • The floor plate (FP) is essential for neural development and is located at the embryo's ventral midline, but research on human FP development has been limited.
  • Researchers successfully derived human embryonic stem cell (hESC)-derived FP tissue that can secrete crucial molecules like Netrin-1 and SHH, vital for tissue patterning.
  • The study reveals that FP induction relies on early exposure to SHH, which inhibits the Dkk-1 gene, ultimately leading to the formation of FP over anterior neurectoderm (AN) and influences regional identity in the derived FP.
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Article Synopsis
  • Human pluripotent stem cell (hPSC)-derived neural crest (NC) cells are important for studying human NC development, disease modeling, and regenerative medicine.
  • The article outlines detailed protocols for differentiating human embryonic stem cells (hESCs) and induced pluripotent stem cells (hiPSCs) into neuroectodermal and NC cells using two different culture methods.
  • Additionally, purification and propagation techniques using flow cytometry are provided, with a typical timeline of 2-5 weeks to generate purified hPSC-NC precursors.
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  • The isolation of human induced pluripotent stem cells (iPSCs) has opened new avenues for modeling and understanding human diseases, including familial dysautonomia (FD), which is characterized by severe peripheral nerve degeneration.
  • Researchers have successfully derived patient-specific FD-iPSCs and differentiated them into various cell types, including peripheral neurons, allowing for an investigation into the specific genetic and cellular mechanisms underlying the disease.
  • The study demonstrates the potential of iPSCs not only for studying disease pathways but also for testing treatments that could correct genetic abnormalities and improve neuronal function.
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Human-induced pluripotent stem cells (hiPSCs) are generated from somatic cells by ectopic expression of the 4 reprogramming factors (RFs) Oct-4, Sox2, Klf4, and c-Myc. To better define the stoichiometric requirements and dynamic expression patterns required for successful hiPSC induction, we generated 4 bicistronic lentiviral vectors encoding the 4 RFs co-expressed with discernable fluorescent proteins. Using this system, we define the optimal stoichiometry of RF expression to be highly sensitive to Oct4 dosage, and we demonstrate the impact that variations in the relative ratios of RF expression exert on the efficiency of hiPSC induction.

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Human embryonic stem cells (hESCs) have enormous potential for applications in basic biology and regenerative medicine. However, harnessing the potential of hESCs toward generating homogeneous populations of specialized cells remains challenging. Here we describe a novel technology for the genetic identification of defined hESC-derived neural cell types using bacterial artificial chromosome (BAC) transgenesis.

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Transgenic green fluorescent protein (GFP) reporter embryonic stem (ES) cells are powerful tools for studying gene regulation and lineage choice during development. Here we present a rapid method for the generation of ES cells expressing GFP under the control of selected genes. Bacterial artificial chromosomes (BACs) from a previously constructed GFP transcriptional fusion library (Gene Expression Nervous System Atlas [GENSAT]) were modified for use in ES cells, and multiple BAC transgenic ES cell lines were generated.

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Many alphaherpesviruses establish a latent infection in the peripheral nervous systems of their hosts. This life cycle requires the virus to move long distances in axons toward the neuron's cell body during infection and away from the cell body during reactivation. While the events underlying entry of the virion into neurons during infection are understood in principle, no such consensus exists regarding viral egress from neurons after reactivation.

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