A review of on-farm recording tools for smallholder dairy farming in developing countries.

The dairy industry has been expanding significantly recently, which has prompted the improvement and adoption of increasingly digital dairy recording tools with cutting-edge technology. The study aimed to identify smallholder dairy farmers' recording tools in developing countries. The study presents the results of an extensive literature review conducted using electronic journal databases.

The effect of the proportion of Modern European ancestry on grower and sow performance of pigs in smallholder systems in Uganda.

Several factors, including breed, lead to divergent performance of pigs for production and reproduction traits in different environments. A recent genomics study showed that Modern European (ME) pig breeds contribute to the ancestry of smallholder pigs in the Hoima and Kamuli districts, Uganda. These pigs were also involved in a longitudinal study with several traits recorded, including 540 body weights (WT) of 374 growing pigs, 195 records of total number of piglets born alive (TBA) of 157 sows, and 110 total number weaned (TNW) records of 94 sows.

The African Goat Improvement Network: a scientific group empowering smallholder farmers.

The African Goat Improvement Network (AGIN) is a collaborative group of scientists focused on genetic improvement of goats in small holder communities across the African continent. The group emerged from a series of workshops focused on enhancing goat productivity and sustainability. Discussions began in 2011 at the inaugural workshop held in Nairobi, Kenya.

Scarce Evidence of Heterosis for Growth Traits in Peruvian Guinea Pigs.

This study aimed to estimate the heterosis for productive traits in a two-way crossbreeding scheme. Four guinea pig lines were originally selected for the following traits: line P1 for the growth rate, P2 for the partial feed conversion rate, M1 for the growth rate of the litter at 10 days of age, and M2 for the litter size at birth. The comparison included 176 purebreds (P1: 46, P2: 43, M1: 54 and M2: 33) and 150 crosses (P1P2: 42, P2P1: 38, M1M2: 11 and M2M1: 59); body weights at birth, 10 days, weaning and 60 days of age were analyzed.

Factors affecting fruit and vegetable consumption and purchase behavior of adults in sub-Saharan Africa: A rapid review.

In order to achieve the Sustainable Development Goals, considerable dietary shifts, including an increase in the consumption of fruit and vegetables (FV) will be required. However, worldwide consumption of FV is far below international recommendations, including in many low- and middle-income countries (LMICs), particularly in Africa. Understanding what, where, when, and how people choose to eat requires an understanding of how individuals are influenced by factors in their social, physical, and macro-level environments.

ssGBLUP Method Improves the Accuracy of Breeding Value Prediction in Huacaya Alpaca.

Improving textile characteristics is the main objective of alpaca breeding. A recently developed SNP chip for alpacas could potentially be used to implement genomic selection and accelerate genetic progress. Therefore, this study aimed to compare the increase in prediction accuracy of three important fiber traits: fiber diameter (FD), standard deviation of fiber diameter (SD), and percentage of medullation (PM) in Huacaya alpacas.

Local Ancestry to Identify Selection in Response to Trypanosome Infection in Baoulé x Zebu Crossbred Cattle in Burkina Faso.

The genomes of crossbred (admixed) individuals are a mosaic of ancestral haplotypes formed by recombination in each generation. The proportion of these ancestral haplotypes in certain genomic regions can be responsible for either susceptibility or tolerance against pathogens, and for performances in production traits. Using a medium-density genomic marker panel from the Illumina Bovine SNP50 BeadChip, we estimated individual admixture proportions for Baoulé x Zebu crossbred cattle in Burkina Faso, which were tested for trypanosome infection by direct ELISA from blood samples.

Genome-wide association study of trypanosome prevalence and morphometric traits in purebred and crossbred Baoulé cattle of Burkina Faso.

In this study, single-SNP GWAS analyses were conducted to find regions affecting tolerance against trypanosomosis and morphometrics traits in purebred and crossbred Baoulé cattle of Burkina Faso. The trypanosomosis status (positive and negative) and a wide set of morphological traits were recorded for purebred Baoulé and crossbred Zebu x Baoulé cattle, and genotyped with the Illumina Bovine SNP50 BeadChip. After quality control, 36,203 SNPs and 619 animals including 343 purebred Baoulé and 279 crossbreds were used for the GWAS analyses.

A Mix of Old British and Modern European Breeds: Genomic Prediction of Breed Composition of Smallholder Pigs in Uganda.

Pig herds in Africa comprise genotypes ranging from local ecotypes to commercial breeds. Many animals are composites of these two types and the best levels of crossbreeding for particular production systems are largely unknown. These pigs are managed without structured breeding programs and inbreeding is potentially limiting.

Community-Based Livestock Breeding: Coordinated Action or Relational Process?

Over the past decade, community-based breeding programs (CBBPs) have been promoted as a viable approach to improving smallholder livelihoods through a systematic livestock breeding. CBBPs aim to initiate systematic breeding at the community level, including an organized animal identification and recording of performance and pedigree data. To ensure the breeding programs' continuity, building capacities, and ownership among participants are essential to the approach.

Detection of copy number variants in African goats using whole genome sequence data.

Background: Copy number variations (CNV) are a significant source of variation in the genome and are therefore essential to the understanding of genetic characterization. The aim of this study was to develop a fine-scaled copy number variation map for African goats. We used sequence data from multiple breeds and from multiple African countries.

Population structure, inbreeding and admixture in local cattle populations managed by community-based breeding programs in Burkina Faso.

High-throughput genomic markers provide an opportunity to assess important indicators of genetic diversity for populations managed in livestock breeding programs. While well-structured breeding programs are common in developed countries, in developing country situations, especially in West Africa, on-farm performance and pedigree recordings are rare, and thus, genomic markers provide insights to the levels of genetic diversity, inbreeding and introgression by other breeds. In this study, we analysed key population parameters such as population structure, admixture and levels of inbreeding in three neighbouring populations of African taurine and taurine × Zebu crosses managed by community-based breeding programs in the South-West of Burkina Faso.

Timing and Extent of Inbreeding in African Goats.

Genetic characterization of African goats is one of the current priorities in the improvement of goats in the continent. This study contributes to the characterization effort by determining the levels and number of generations to common ancestors ("age") associated with inbreeding in African goat breeds and identifies regions that contain copy number variation mistyped as being homozygous. Illumina 50k single nucleotide polymorphism genotype data for 608 goats from 31 breeds were used to compute the level and age of inbreeding at both local (marker) and global levels (F) using a model-based approach based on a hidden Markov model.

Misidentification of runs of homozygosity islands in cattle caused by interference with copy number variation or large intermarker distances.

Background: Runs of homozygosity (ROH) islands are stretches of homozygous sequence in the genome of a large proportion of individuals in a population. Algorithms for the detection of ROH depend on the similarity of haplotypes. Coverage gaps and copy number variants (CNV) may result in incorrect identification of such similarity, leading to the detection of ROH islands where none exists.

The impact of gender-blindness on social-ecological resilience: The case of a communal pasture in the highlands of Ethiopia.

We studied how the failure to take into account gendered roles in the management of a communal pasture can affect the resilience of this social-ecological system. Data were collected using qualitative methods, including focus group discussions, in-depth interviews, and participant observations from one community in the highlands of Ethiopia. The results show that women are excluded from the informal institution that defines the access and use rules which guide the management of the communal pasture.

Trypanosomosis: a priority disease in tsetse-challenged areas of Burkina Faso.

Trypanosomosis is an important disease affecting humans as well as animals. It remains a big constraint to livestock productions in tropical areas. The objective of this study was to assess the importance of trypanosomosis among cattle diseases in Burkina Faso, mainly in tsetse-challenged areas, and to capture information on how farmers apply available methods for controlling the disease.

Dairy goat production systems: status quo, perspectives and challenges.

Goat production concentrated in developing countries (tropics, dry areas), contributes largely to the livelihoods of low and medium income farmers. Farming systems in these areas have evolved to cope with the formidable constraints imposed by harsh natural and economic conditions by adapting integrated crop/livestock production strategies. In Asia, Africa and Latin America, due to its almost exclusive extensive nature, goat production relies mainly on grazing on communal lands that hardly provide the minimum nutrient requirements due to overstocking and degradation.

Socioeconomic characteristics of urban and peri-urban dairy production systems in the North western Ethiopian highlands.

In order to evaluate the socio-economic characteristics of urban and peri-urban dairy production systems in the North western Ethiopian highlands, a field survey was conducted which included 256 farms. It is concluded that urban farmers tend to specialize on dairy production and support the family income from non-agricultural activities, while agricultural activities other than milk production forms an additional source of income in peri-urban farms. The specialization of urban dairy producers includes the more frequent use of crossbred cows with higher milk yield.

Characterization of Awassi lamb fattening systems: a Syrian case study.

Intensive lamb fattening systems are evolving in developing Middle Eastern countries due to high demand for lambs at favorable prices; however, little is known about their characteristics and constraints. A survey was conducted in Syria involving 241 farmers to characterize the fattening production systems and main constraints, with emphasis on feeding, management, labor, and marketing. Most farmers (90%) considered the income from fattening to be from medium to high, and 57% expressed that lamb fattening along with alternative income sources compose the family's livelihood strategies.

Performance and limitation of two dairy production systems in the North western Ethiopian highlands.

In order to characterise the dairy production systems as well as the productive and reproductive performance of dairy cows in the study area, a total of 256 and 54 dairy farms were used for survey and monitoring data collection, respectively. Based on breed, land size, feed and market accessibility, two major dairy production systems were identified: a rather specialized, urban, and a peri-urban dairy production system. Urban farmers owned larger herds but farmed less land, and sold a greater proportion of liquid milk than peri-urban farmers, who processed more milk.

Genetic and morphological characterisation of the Ankole Longhorn cattle in the African Great Lakes region.

The study investigated the population structure, diversity and differentiation of almost all of the ecotypes representing the African Ankole Longhorn cattle breed on the basis of morphometric (shape and size), genotypic and spatial distance data. Twentyone morphometric measurements were used to describe the morphology of 439 individuals from 11 sub-populations located in five countries around the Great Lakes region of central and eastern Africa. Additionally, 472 individuals were genotyped using 15 DNA microsatellites.