Publications by authors named "Manohar J"

Article Synopsis
  • Pancreatic acinar cell carcinoma (PACC) is a rare and aggressive tumor with few treatment options beyond surgery, prompting a study of its genomic features.
  • The research involved whole-genome and RNA sequencing of samples from 3 metastatic PACC patients, revealing markers of homologous recombination deficiency (HRD) linked to BRCA1/2 and FANCL mutations, which showed positive responses to PARP inhibitors.
  • The study also identified significant structural variants and alterations in key pathways, suggesting potential targets for targeted therapies and emphasizing the need for genomic profiling to customize treatment for better outcomes.
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Background: Adenocarcinoma of the esophagus and stomach demands a deeper molecular understanding to advance treatment strategies and improve patient outcomes. Here, we profiled the genome and transcriptome landscape of these cancers, explored molecular characteristics that are undetectable by other sequencing platforms, and analyzed their potential clinical ramifications.

Methods: Our study employed state-of-the-art integrative analyses of whole genome and transcriptome sequencing on 51 matched tumor and germline samples from 46 patients.

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Gastrointestinal stromal tumors (GISTs) are the most common mesenchymal neoplasm of the digestive tract. Despite multiple therapeutic advances, patients with advanced disease frequently develop resistance to tyrosine kinase inhibitors (TKIs), and therefore represent a therapeutic challenge. We employed whole genome sequencing (WGS) on three metastatic GISTs refractory to various TKIs and explored a publicly available cohort of 499 GISTs.

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Background: Advanced-stage tube-ovarian cancers (TOC) and uterine cancers (UC) significantly contribute to cancer mortality. While surgery achieves clinical remission in most cases, recurrence often necessitates systemic therapy. Recent molecular phenotype studies have advanced targeted therapies.

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Article Synopsis
  • * Key mutations were identified in various genes, such as APC and TP53, with significant genomic alterations including a unique RAD51 biallelic deleterious translocation linked to homologous recombination deficiency.
  • * The research also found no major differences in mutation load or genetic features between traditional and oncocytic ACC subtypes, revealing a broad range of genomic changes that may help guide future cancer treatment options.
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Merkel cell carcinoma (MCC) is an aggressive neuroendocrine neoplasm of the skin. Immunosuppression, ultraviolet radiation and the integration of Merkel cell polyomavirus (MCPyV) have all been shown to be involved in the pathogenesis of this malignancy. We performed whole genome sequencing on two MCPyV-negative cases of MCC that demonstrated very different clinical presentations and outcomes, and mutational profiles.

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  • Advanced urothelial cancer displays significant genetic diversity and involves complex interactions between internal and external mutagens, which contributes to its deadly nature.
  • The study revealed that APOBEC3-induced mutations occur early during tumor development, while chemotherapy leads to a surge of later mutations, with both processes affecting the structure of extrachromosomal DNA.
  • Findings emphasized the role of circular ecDNA in the development of treatment resistance, specifically through CCND1 amplifications, highlighting key mechanisms that can inform future cancer therapies.
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Colorectal carcinoma (CRC) is a heterogeneous group of tumors with varying therapeutic response and prognosis, and evidence suggests the tumor immune microenvironment (TIME) plays a pivotal role. Using advanced molecular and spatial biology technologies, we aimed to evaluate the TIME in patients with CRC to determine whether specific alterations in the immune composition correlated with prognosis. We identified primary and metastatic tumor samples from 31 consented patients, which were profiled with whole-exome sequencing and bulk RNA-seq.

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Iron accumulation in tumors contributes to disease progression and chemoresistance. Although targeting this process can influence various hallmarks of cancer, the immunomodulatory effects of iron chelation in the tumor microenvironment are unknown. Here, we report that treatment with deferiprone, an FDA-approved iron chelator, unleashes innate immune responses that restrain ovarian cancer.

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Background: Working memory (WM) is one of the most influential cognitive functions in encoding, registering, and retrieving information. It influences the learning process in children. Its role becomes essential, especially in a child with a learning disability (LD).

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Article Synopsis
  • Researchers are investigating the molecular differences between primary and metastatic upper tract urothelial carcinoma (UTUC) using advanced sequencing and imaging techniques on tumor samples from patients.
  • Their findings reveal that genomic alterations in tumors can differ significantly between the primary and metastatic sites, while the overall molecular and immune characteristics remain stable.
  • This study highlights the importance of single-cell analysis in understanding cancer evolution and suggests that different treatment strategies may be needed for primary and metastatic UTUC due to these genomic discrepancies.
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The molecular characterization of male breast cancer (MaBC) has received limited attention in research, mostly because of its low incidence rate, accounting for only 0.5% to 1% of all reported cases of breast cancer each year. Managing MaBC presents significant challenges, with most treatment protocols being adapted from those developed for female breast cancer.

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  • Cancer of unknown primary (CUP) poses a major challenge, being a leading cause of cancer death despite better diagnostic methods.
  • A novel genomic analysis using whole-exome sequencing (WES) and RNA sequencing (RNA-seq) helped tailor treatment for a patient with a history of multiple tumors and fast progression on chemotherapy.
  • The approach resulted in significant improvements across all metastatic sites and underscores the need for personalized genomic profiling to effectively manage CUP and identify tumor origins.
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  • Several reports have documented a rare primary liver tumor that exhibits features similar to follicular thyroid neoplasms, but it has unique characteristics, including specific genetic fusions and immunoreactivity for inhibin.
  • This study presents a comprehensive analysis of 11 cases of these tumors, highlighting the typical patient profile (adult women with no prior liver disease), tumor characteristics, and the methods used for investigation, such as whole-genome sequencing (WGS).
  • The findings indicate that these tumors, which show distinct growth patterns and genetic fusions, should be classified as "NIPBL:NACC1 fusion hepatic carcinoma," due to their unique histological and molecular features.
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Introduction: With the growing prevalence of robotic-assisted total knee arthroplasty (RATKA), the significance of effectively addressing complex deformities using this approach is gaining widespread recognition. This article underscores the importance of a novel mid-resection workflow specifically tailored for RATKA in cases with complex deformities.

Case Report: A 58-year-old female patient diagnosed with severe osteoarthritis in both knees and a stiff left knee underwent RATKA utilizing a mid-resection workflow.

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Homologous recombination (HR) deficiency is associated with DNA rearrangements and cytogenetic aberrations. Paradoxically, the types of DNA rearrangements that are specifically associated with HR-deficient cancers only minimally affect chromosomal structure. Here, to address this apparent contradiction, we combined genome-graph analysis of short-read whole-genome sequencing (WGS) profiles across thousands of tumours with deep linked-read WGS of 46 BRCA1- or BRCA2-mutant breast cancers.

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Isolated Tillaux fractures are uncommon injuries that occur due to external rotational forces acting on the ankle joint. They are more commonly seen in adolescents due to the presence of open epiphyses. In adults, isolated Tillaux fractures present as plafond fractures well described with the AO (Arbeitsgemeinschaft für Osteosynthesefragen) Classification as well as Types 1, 2, and 3 according to the degree of articular comminution present.

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Although immune checkpoint inhibitors (ICIs) are increasingly used as second-line treatments for urothelial cancer (UC), only a small proportion of patients respond. Therefore, understanding the mechanisms of response to ICIs is critical to improve clinical outcomes for UC patients. The tumor microenvironment (TME) is recognized as a key player in tumor progression and the response to certain anti-cancer treatments.

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Sarcomatoid urothelial carcinoma (SUC) is a rare subtype of urothelial carcinoma (UC) that typically presents at an advanced stage compared to more common variants of UC. Locally advanced and metastatic UC have a poor long-term survival following progression on first-line platinum-based chemotherapy. Antibodies directed against the programmed cell death 1 protein (PD-1) or its ligand (PD-L1) are now approved to be used in these scenarios.

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The ultimate goal of modern dentistry is to restore the normal comfort, contour, function, aesthetics, health, and speech of a patient's dentition while restoring or replacing teeth. When it comes to the anterior region, particularly the maxillary anteriors, aesthetics is of prime importance as it shapes the smile of the patient and builds confidence. The most ideal treatment option for replacement of a single missing tooth in the anterior region is the placement of implants.

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Article Synopsis
  • - Neuroendocrine prostate cancer (NEPC) is a highly aggressive form of prostate cancer that can form directly or develop from existing prostate adenocarcinoma, often as a way to resist treatment.
  • - NEPC commonly shows the loss of key tumor suppressor genes (RB1, TP53, PTEN), which are also found in some prostate adenocarcinoma cases.
  • - The study emphasizes the importance of single-cell genomic analysis of circulating tumor cells to explore the genetic diversity and heterogeneity of tumors in patients with advanced prostate cancer.
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  • Fresh frozen (FF) tissues are ideal for RNA sequencing (RNA-seq), but most clinical samples are stored as formalin-fixed, paraffin-embedded (FFPE) tissues, creating a challenge for RNA-seq implementation in clinical settings.
  • The study analyzed 32 FFPE tumor samples from 11 patients using three different exome capture methods and compared the results with RNA-seq from matching FF samples to evaluate their effectiveness.
  • The findings showed high correlation between the expression profiles of FFPE and FF samples, indicating that exome capture methods can reliably detect important gene expressions and mutations, paving the way for their use in precision oncology.
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  • The study evaluates the effectiveness of on-site plasma-based next-generation sequencing (NGS) for analyzing circulating tumor DNA (ctDNA) in cancer patients, particularly those with metastatic disease.
  • Results show that the NGS test has a higher success rate in detecting genetic alterations from plasma samples compared to primary tumor samples, demonstrating its potential utility in clinical practice.
  • The findings support the integration of plasma tests into routine oncology management, as they provide valuable information to guide precision therapy while reducing the need for invasive tissue biopsies.
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