Quantifying vertebrate zoogeographical regions of Australia using geospatial turnover in the species composition of mammals, birds, reptiles and terrestrial amphibians.

A geospatial analysis of 1,906,302 records of 1938 species of Australian vertebrates has shown that the original regions proposed in the 19th century, namely the Eyrean, Torresian and Bassian still hold. The analysis has shown that the Eyrean region has an east-west divide, forming two, possibly independent arid regions (Eastern Desert and Western Desert provinces), that are shaped by topography and rainfall. A revised and interim zoogeographical area taxonomy of the Australian region is presented herein.

Bioregionalisation of the freshwater zoogeographical areas of mainland China.

Biogeographic regionalisations extract patterns of co-occurrence from different taxa to form a hierarchical system of geographical units of different scales. This system is useful for revealing biogeographic patterns and can be used as the basis for scientific communication between different fields. The history of Chinese freshwater biogeography is not well known to most modern biogeographers and is reviewed herein.

Ronald Brady and the cladists.

Ronald Brady was the first philosopher to defend pattern cladistics as an independent scientific field. That independence was achieved through the decoupling of biological systematics from phylogenetics--that is, inferred evolutionary processes (e.g.

Do phytogeographic patterns reveal biomes or biotic regions?

We present the largest comparative biogeographical analysis that has complete coverage of Australia's geography (20 phytogeographical subregions), using the most complete published molecular phylogenies to date of large Australian plant clades (Acacia, Banksia and the eucalypts). Two distinct sets of areas within the Australian flora were recovered, using distributional data from the Australasian Virtual Herbarium (AVH) and the Atlas of Living Australia (ALA): younger Temperate, Eremaean and Monsoonal biomes, and older southwest + west, southeast and northern historical biogeographical regions. The analyses showed that by partitioning the data into two sets, using either a Majority or a Frequency method to select taxon distributions, two equally valid results were found.

Temporal area approach for distributional data in biogeography.

A structural approach to temporality in distributional data for use in palaeobiogeography is described herein. Pre-established areas in the distributional data matrix are split temporally, allowing a single geographical space to have multiple iterations [e.g.

Aphyly: identifying the flotsam and jetsam of systematics.

Many taxon names in any classification will be composed of taxa that have yet to be demonstrated as monophyletic, that is, characterized by synapomorphies. Such taxa might be called aphyletic, the flotsam and jetsam in systematics, simply meaning they require taxonomic revision. The term aphyly is, however, the same as, if not identical to, Hennig's "Restkörper" and Bernardi's merophyly.

A Cladist is a systematist who seeks a natural classification: some comments on Quinn (2017).

In response to Quinn (Biol Philos, 2017. 10.1007/s10539-017-9577-z) we identify cladistics to be about natural classifications and their discovery and thereby propose to add an eighth cladistic definition to Quinn's list, namely the systematist who seeks to discover natural classifications, regardless of their affiliation, theoretical or methodological justifications.

Establishing a Framework for a Natural Area Taxonomy.

The identification of areas of endemism is essential in building an area classification, but plays little role in how natural areas are discovered. Rather area monophyly, derived from cladistics, is essential in the discovery of natural area classifications or area taxonomy. We propose Area Taxonomy to be a new sub-discipline of historical biogeography, one that can be revised and debated, and which has its own area nomenclature.

What is Intuitive Taxonomic Practice?

Scotland and Steel (2015) recently explored the idea of character compatibility, examining the issue from the perspective of a particular model, "a simple and extreme model in which each character either fits perfectly on some tree, or is entirely random $\ldots$,." (Scotland and Steel 2015, p. 492, abstract).

From Correlation to Causation: What Do We Need in the Historical Sciences?

Changes in the methodology of the historical sciences make them more vulnerable to unjustifiable speculations being passed off as scientific results. The integrity of historical science is in peril due the way speculative and often unexamined causal assumptions are being used to generate data and underpin the identification of correlations in such data. A step toward a solution is to distinguish between plausible and speculative assumptions that facilitate the inference from measured and observed data to causal claims.

A review of the Carboniferous and Permian trilobites of Australia.

The first complete review of the Carboniferous and Permian trilobite species found within Australia is presented to assess the current standing of Australian taxa in a modern systematic context. The review consists of four families, 20 genera and 61 known species from the early Tournaisian to Moscovian (358.9 Ma to 304 Ma), throughout New South Wales, Tasmania, Western Australia and Queensland.

Spatial variation in the climatic predictors of species compositional turnover and endemism.

Previous research focusing on broad-scale or geographically invariant species-environment dependencies suggest that temperature-related variables explain more of the variation in reptile distributions than precipitation. However, species-environment relationships may exhibit considerable spatial variation contingent upon the geographic nuances that vary between locations. Broad-scale, geographically invariant analyses may mask this local variation and their findings may not generalize to different locations at local scales.

Does counting species count as taxonomy? On misrepresenting systematics, yet again.

Recent commentary by Costello and collaborators on the current state of the global taxonomic enterprise attempts to demonstrate that taxonomy is not in decline as feared by taxonomists, but rather is increasing by virtue of the rate at which new species are formally named. Having supported their views with data that clearly indicate as much, Costello et al. make recommendations to increase the rate of new species descriptions even more.

Quantifying phytogeographical regions of Australia using geospatial turnover in species composition.

The largest digitized dataset of land plant distributions in Australia assembled to date (750,741 georeferenced herbarium records; 6,043 species) was used to partition the Australian continent into phytogeographical regions. We used a set of six widely distributed vascular plant groups and three non-vascular plant groups which together occur in a variety of landscapes/habitats across Australia. Phytogeographical regions were identified using quantitative analyses of species turnover, the rate of change in species composition between sites, calculated as Simpson's beta.

Quantifying high resolution transitional breaks in plant and mammal distributions at regional extent and their association with climate, topography and geology.

Objectives: We quantify spatial turnover in communities of 1939 plant and 59 mammal species at 2.5 km resolution across a topographically heterogeneous region in south-eastern Australia to identify distributional breaks and low turnover zones where multiple species distributions overlap. Environmental turnover is measured to determine how climate, topography and geology influence biotic turnover differently across a variety of biogeographic breaks and overlaps.

Implementation as theory, hierarchy as transformation, homology as synapomorphy.

Presently cladistics is based on, and justified by, a computer implementation (Wagner Parsimony) rather than sound methodological or theoretical foundations. In this paper, the recent goals of cladistics that are derived from computer implementations and 'tree-thinking' are discussed. The discussion raises a critical point, namely whether one can dispense with these recent goals and adopt a wholly systematic approach, one herein termed systematic thinking.

Towards an Australian Bioregionalisation Atlas: A provisional area taxonomy of Australia's biogeographical regions.

The large number, definition, varied application and validity of named Australian biogeographical regions reflect their ad hoc development via disparate methods or case study idiosyncracies. They do not represent a coherent system. In order to resolve these uncertainties an Australian Bioregionalisation Atlas is proposed as a provisional hierarchical classification, accounting for all known named areas.

The bioregionalisation revival.

The aim of this paper is to review some of the economic drivers of large scale bioregionalisation, using examples from deep sea hydrothermal vent communities, the Antarctic and sub-Antarctic, and Australia. These economic drivers are mainly recent conservation efforts, while early 20th century bioregionalisation was driven by 19th century taxonomy and exploration to assess available biological resources for economic exploitation. Modern regionalisation, particularly of the Antarctic and deep sea hydrothermal vent communities, are driven by conservation studies to protect areas from economic exploitation, rather than biogeographical questions concerning endemism and natural classification.

Adolf naef (1883-1949): on foundational concepts and principles of systematic morphology.

During the early twentieth century, the Swiss Zoologist Adolf Naef (1883-1949) established himself as a leader in German comparative anatomy and higher level systematics. He is generally labeled an 'idealistic morphologist', although he himself called his research program 'systematic morphology'. The idealistic morphology that flourished in German biology during the first half of the twentieth century was a rather heterogeneous movement, within which Adolf Naef worked out a special theoretical system of his own.