Estimating the contribution of early and late noise in vision from psychophysical data.

Human performance in psychophysical detection and discrimination tasks is limited by inner noise. It is unclear to what extent this inner noise arises from early noise (e.g.

From chocolate to palm oil: The future of Indonesia's cocoa plantations.

Indonesia is the world's third largest cocoa producer, but production is decreasing since 2011. We revisited cocoa farmers for an environmental assessment in Luwu Timur, Sulawesi, 7 months after a socio-economic survey on cocoa certification outcomes and observed many cocoa plantations being converted into oil palm and maize. Including our field data as well as secondary data on commodity prices and yields, we outline reasons for cocoa conversion, potential consequences for biodiversity, and assess the future outlook for the Indonesian cocoa sector.

Standard models of spatial vision mispredict edge sensitivity at low spatial frequencies.

One well-established characteristic of early visual processing is the contrast sensitivity function (CSF) which describes how sensitivity varies with the spatial frequency (SF) content of the visual input. The CSF prompted the development of a now standard model of spatial vision. It represents the visual input by activity in orientation- and SF selective channels which are nonlinearly recombined to predict a perceptual decision.

What Fechner could not do: Separating perceptual encoding and decoding with difference scaling.

A key question in perception research is how stimulus variations translate into perceptual magnitudes, that is, the perceptual encoding process. As experimenters, we cannot probe perceptual magnitudes directly, but infer the encoding process from responses obtained in a psychophysical experiment. The most prominent experimental technique to measure perceptual appearance is matching, where observers adjust a probe stimulus to match a target in its appearance along the dimension of interest.

Sustainable maize intensification through site-specific nutrient management advice: Experimental evidence from Nigeria.

There is growing evidence on the impacts of site-specific nutrient management (SSNM) from Asia. The evidence for Sub-Saharan Africa (SSA), where SSNM developments are more recent and where conditions concerning soil fertility and fertilizer use differ importantly from those in Asia, is extremely scarce. We evaluate a SSNM advisory tool that allows extension agents to generate fertilizer recommendations tailored to the specific situation of an individual farmer's field, using a three-year randomized controlled trial with 792 smallholder farmers in the maize belt of northern Nigeria.

Using tools to predict flame retardant metabolites for more informative exposomics-based approaches.

The positive identification of xenobiotics and their metabolites in human biosamples is an integral aspect of exposomics research, yet challenges in compound annotation and identification continue to limit the feasibility of comprehensive identification of total chemical exposure. Nonetheless, the adoption of tools such as metabolite prediction software, QSAR-ready structural conversion workflows, and molecular standards databases can aid in identifying novel compounds in untargeted mass spectral investigations, permitting the assessment of a more expansive pool of compounds for human health hazard. This strategy is particularly applicable when it comes to flame retardant chemicals.

Rice availability and stability in Africa under future socio-economic development and climatic change.

As Africa is facing multiple challenges related to food security, frameworks integrating production and availability are urgent for policymaking. Attention should be given not only to gradual socio-economic and climatic changes but also to their temporal variability. Here we present an integrated framework that allows one to assess the impacts of socio-economic development, gradual climate change and climate anomalies.

A sustainable future for Africa through continental free trade and agricultural development.

Developing and integrating agricultural markets may be key to addressing Africa's sustainability challenges. By modelling trade costs from farm gate to potential import markets across eight African regions, we investigate the impact of individual components of continental free trade and the complementary role of domestic agricultural development through increased market access for farmers and agricultural intensification. We find that free trade would increase intra-African agricultural trade sixfold by 2030 but-since it does not address local supply constraints-outside food imports and undernourishment would reduce only marginally.

Parent and Caregiver Perspectives towards Cannabidiol as a Treatment for Fragile X Syndrome.

Cannabidiol (CBD) is a non-intoxicating chemical in cannabis plants that is being investigated as a candidate for treatment in Fragile X Syndrome (FXS), a leading known cause of inherited intellectual developmental disability. Studies have shown that CBD can reduce symptoms such as anxiety, social avoidance, hyperactivity, aggression, and sleep problems. This is a qualitative study that utilized a voluntary-anonymous survey that consisted of questions regarding demographics, medical information, the form, type, brand, dose, and frequency of CBD use, the rationale for use, the perception of effects, side effects, and costs.

Fixational eye movements enable robust edge detection.

Human vision relies on mechanisms that respond to luminance edges in space and time. Most edge models use orientation-selective mechanisms on multiple spatial scales and operate on static inputs assuming that edge processing occurs within a single fixational instance. Recent studies, however, demonstrate functionally relevant temporal modulations of the sensory input due to fixational eye movements.

Conjoint measurement of perceived transparency and perceived contrast in variegated checkerboards.

One fundamental question in vision research is how the retinal input is segmented into perceptually relevant variables. A striking example of this segmentation process is transparency perception, in which luminance information in one location contributes to two perceptual variables: the properties of the transparent medium itself and of what is being seen in the background. Previous work by Robilotto et al.

Resilience of global and local value chains to the Covid-19 pandemic: Survey evidence from vegetable value chains in Senegal.

In this paper we descriptively investigate the Covid-19 pandemic's early impact on the fruit and vegetable supply chain in Senegal, using trade statistics and survey data collected through online questionnaires and telephone interviews with smallholder farmers, agro-industrial companies, agricultural workers, traders, importers, and consumers. Our results point to major differences in how Covid-19 and containment measures disrupt supply chains between the modern export-oriented supply chain that is centered around a few large vertically integrated agro-industrial companies, and the more traditional domestic-oriented supply chain with a large number of smallholder farmers and informal traders-with the former being more resilient to the Covid-19 shock. We show that both the modern and the traditional supply chain innovate to cope with the Covid-19 containment measures.

Similarities and Differences in Gene Expression Networks Between the Breast Cancer Cell Line Michigan Cancer Foundation-7 and Invasive Human Breast Cancer Tissues.

Failure to adequately characterize cell lines, and understand the differences between and biology, can have serious consequences on the translatability of scientific studies to human clinical trials. This project focuses on the Michigan Cancer Foundation-7 (MCF-7) cells, a human breast adenocarcinoma cell line that is commonly used for cancer research, with over 42,000 publications in PubMed. In this study, we explore the key similarities and differences in gene expression networks of MCF-7 cell lines compared to human breast cancer tissues.

Induced Pluripotent Stem Cells (iPSCs) in Vascular Research: from Two- to Three-Dimensional Organoids.

Stem cell technology has been around for almost 30 years and in that time has grown into an enormous field. The stem cell technique progressed from the first successful isolation of mammalian embryonic stem cells (ESCs) in the 1990s, to the production of human induced-pluripotent stem cells (iPSCs) in the early 2000s, to finally culminate in the differentiation of pluripotent cells into highly specialized cell types, such as neurons, endothelial cells (ECs), cardiomyocytes, fibroblasts, and lung and intestinal cells, in the last decades. In recent times, we have attained a new height in stem cell research whereby we can produce 3D organoids derived from stem cells that more accurately mimic the in vivo environment.

Global hunger and climate change adaptation through international trade.

International trade enables us to exploit regional differences in climate change impacts and is increasingly regarded as a potential adaptation mechanism. Here, we focus on hunger reduction through international trade under alternative trade scenarios for a wide range of climate futures. Under the current level of trade integration, climate change would lead to up to 55 million people who are undernourished in 2050.

Mapping Chemical Respiratory Sensitization: How Useful Are Our Current Computational Tools?

Chemical respiratory sensitization is an immunological process that manifests clinically mostly as occupational asthma and is responsible for 1 in 6 cases of adult asthma, although this may be an underestimate of the prevalence, as it is under-diagnosed. Occupational asthma results in unemployment for roughly one-third of those affected due to severe health issues. Despite its high prevalence, chemical respiratory sensitization is difficult to predict, as there are currently no validated models and the mechanisms are not entirely understood, creating a significant challenge for regulatory bodies and industry alike.

Design of Digital Agricultural Extension Tools: Perspectives from Extension Agents in Nigeria.

Given the marked heterogeneous conditions in smallholder agriculture in Sub-Saharan Africa, there is a growing policy interest in site-specific extension advice and the use of digital extension tools to provide site-specific information. Empirical ex-ante studies on the design of digital extension tools and their use are rare. Using data from a choice experiment in Nigeria, we elicit and analyze the preferences of extension agents for major design features of ICT-enabled decision support tools (DSTs) aimed at site-specific nutrient management extension advice.

Up to 5-year retention of abatacept in Belgian patients with moderate-to-severe rheumatoid arthritis: a sub-analysis of the international, observational ACTION study.

Favorable efficacy and safety profiles have been demonstrated for abatacept in patients with rheumatoid arthritis (RA) in randomized controlled trials, but these data require validation during long-term follow-ups in routine clinical practice. This study explored long-term safety and retention rates in RA patients treated with intravenous abatacept in the Belgian cohort of the international AbataCepT In rOutiNe clinical practice (ACTION) study (NCT02109666). This non-interventional, observational, longitudinal study included Belgian patients aged ≥ 18 years with moderate-to-severe RA who started intravenous abatacept treatment as first- or second/further-line biologic therapy in routine clinical practice.

Author Correction: Functionally Enigmatic Genes in Cancer: Using TCGA Data to Map the Limitations of Annotations.

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

Toward reliable measurements of perceptual scales in multiple contexts.

A central question in psychophysical research is how perceptual differences between stimuli translate into physical differences and vice versa. Characterizing such a psychophysical scale would reveal how a stimulus is converted into a perceptual event, particularly under changes in viewing conditions (e.g.

Functionally Enigmatic Genes in Cancer: Using TCGA Data to Map the Limitations of Annotations.

Cancer is a comparatively well-studied disease, yet despite decades of intense focus, we demonstrate here using data from The Cancer Genome Atlas that a substantial number of genes implicated in cancer are relatively poorly studied. Those genes will likely be missed by any data analysis pipeline, such as enrichment analysis, that depends exclusively on annotations for understanding biological function. There is no indication that the amount of research - indicated by number of publications - is correlated with any objective metric of gene significance.

Farmers' preferences for high-input agriculture supported by site-specific extension services: Evidence from a choice experiment in Nigeria.

Agricultural extension to improve yields of staple food crops and close the yield gap in Sub-Saharan Africa often entails general recommendations on soil fertility management that are distributed to farmers in a large growing area. Site-specific extension recommendations that are better tailored to the needs of individual farmers and fields, and enabled by digital technologies, could potentially bring about yield and productivity improvements. In this paper, we analyze farmers' preferences for high-input maize production supported by site-specific nutrient management recommendations provided by an ICT-based extension tool that is being developed for extension services in the maize belt of Nigeria.

A dynamic view on agricultural trade patterns and virtual water flows in Peru.

Increasing integration in global markets can foster economic growth, but also impacts the use of water resources for the production of traded goods. This is particularly critical for low-and middle-income countries where increasing agricultural exports, especially of high-value horticultural products such as fresh fruits and vegetables is promoted as a pro-poor development strategy. The aim of this paper is to quantify the contribution of agricultural trade to virtual water flows and economic gains.

Maximum likelihood difference scales represent perceptual magnitudes and predict appearance matches.

One central problem in perception research is to understand how internal experiences are linked to physical variables. Most commonly, this relationship is measured using the method of adjustment, but this has two shortcomings: The perceptual scales that relate physical and perceptual variables are not measured directly, and the method often requires perceptual comparisons between viewing conditions. To overcome these problems, we measured perceptual scales of surface lightness using maximum likelihood difference scaling, asking observers only to compare the lightness of surfaces presented in the same context.