In this study we investigate, using all-atom molecular-dynamics computer simulations, the in-plane diffusion of a doxorubicin drug molecule in a thin film of water confined between two silica surfaces. We find that the molecule diffuses along the channel in the manner of a Gaussian diffusion process, but with parameters that vary according to its varying transversal position. Our analysis identifies that four Gaussians, each describing particle motion in a given transversal region, are needed to adequately describe the data.
View Article and Find Full Text PDFInterface diffusion along a metal/ceramic interface present in numerous energy and electronic devices can critically affect their performance and stability. Hole formation in a polycrystalline Ni film on an α-AlO substrate coupled with a continuum diffusion analysis demonstrates that Ni diffusion along the Ni/α-AlO interface is surprisingly fast. Ab initio calculations demonstrate that both Ni vacancy formation and migration energies at the coherent Ni/α-AlO interface are much smaller than in bulk Ni, suggesting that the activation energy for diffusion along coherent Ni/α-AlO interfaces is comparable to that along (incoherent/high angle) grain boundaries.
View Article and Find Full Text PDFCombining concepts of semiconductor physics and corrosion science, we develop a novel approach that allows us to perform ab initio calculations under controlled potentiostat conditions for electrochemical systems. The proposed approach can be straightforwardly applied in standard density functional theory codes. To demonstrate the performance and the opportunities opened by this approach, we study the chemical reactions that take place during initial corrosion at the water-Mg interface under anodic polarization.
View Article and Find Full Text PDFThe Royal Society Scientific Discussion Meeting 'The challenges of hydrogen and metals' was held in Carlton House Terrace, London, UK, on 16-18 January 2017. This is the introductory article to the discussion meeting issue which includes contributed papers and seven discussion papers. Here, we introduce the motivation to hold the Meeting and give a brief overview of the contents.
View Article and Find Full Text PDFThe technique of plasmonic ELISA is utilised here to detect the HIV-1 protein gp120 with the ultralow limit of detection of 8 × 10(-20) M (10(-17) g mL(-1)) in an independent laboratory. It was corroborated that changes in the concentration of hydrogen peroxide as small as 0.05 μM could lead to nanoparticle solutions of completely different tonality.
View Article and Find Full Text PDFWe present a force field for bulk alumina (Al2O3), which has been parametrized by fitting the energies, forces, and stresses of a large database of reference configurations to those calculated with density functional theory (DFT). We use a functional form that is simpler and computationally more efficient than some existing models of alumina parametrized by a similar technique. Nevertheless, we demonstrate an accuracy of our potential that is comparable to those existing models and to DFT.
View Article and Find Full Text PDFA methodology for calculating the contribution of charged defects to the configurational free energy of an ionic crystal is introduced. The temperature-independent Wang-Landau Monte Carlo technique is applied to a simple model of a solid electrolyte, consisting of charged positive and negative defects on a lattice. The electrostatic energy is computed on lattices with periodic boundary conditions, and used to calculate the density of states and statistical-thermodynamic potentials of this system.
View Article and Find Full Text PDFRecent years have seen great advances in our ability to predict crystal structures from first principles. However, previous algorithms have focused on the prediction of bulk crystal structures, where the global minimum is the target. Here, we present a general atomistic approach to simulate in multicomponent systems the structures and free energies of grain boundaries and heterophase interfaces with fixed stoichiometric and non-stoichiometric compositions.
View Article and Find Full Text PDFThe well-known corrosion resistance and biocompatibility of TiN depend on the structural and chemical properties of the stable oxide film that forms spontaneously on its surface after exposure to air. In the present work, we focus on the atomistic structure and stability of the TiN(100) surface in contact with an oxidizing atmosphere. The early oxidation stages of TiN(100) are investigated by means of first-principles molecular dynamics (FPMD).
View Article and Find Full Text PDFWe present a method for simulating clusters or molecules subjected to an external pressure, which is exerted by a pressure-transmitting medium. It is based on the canonical Langevin thermostat, but extended in such a way that the Brownian forces are allowed to operate only from the region exterior to the cluster. We show that the frictional force of the Langevin thermostat is linked to the pressure of the reservoir in a unique way, and that this property manifests itself when the particle it acts upon is not pointlike but has finite dimensions.
View Article and Find Full Text PDFEmbrittlement by the segregation of impurity elements to grain boundaries is one of a small number of phenomena that can lead to metallurgical failure by fast fracture. Here we settle a question that has been debated for over a hundred years: how can minute traces of bismuth in copper cause this ductile metal to fail in a brittle manner? Three hypotheses for Bi embrittlement of Cu exist: two assign an electronic effect to either a strengthening or weakening of bonds, the third postulates a simple atomic size effect. Here we report first principles quantum mechanical calculations that allow us to reject the electronic hypotheses, while supporting a size effect.
View Article and Find Full Text PDFSelective oxidation of the surface of an ordered alloy requires redistribution of the atomic species in the vicinity of the surface. This process can be understood in terms of the formation and movements of point defects in the compound. On the basis of ab initio density-functional calculation we found both the creation of exchange defects near the NiAl surface and segregation of Ni vacancies to the top layer to be extremely favorable in the presence of oxygen.
View Article and Find Full Text PDFPhys Rev B Condens Matter
October 1996
Phys Rev B Condens Matter
July 1991