Generic Reporter Sets for Colorimetric Multiplex dPCR Demonstrated with 6-Plex SNP Quantification Panels.

Digital PCR (dPCR) is a powerful method for highly sensitive and precise quantification of nucleic acids. However, designing and optimizing new multiplex dPCR assays using target sequence specific probes remains cumbersome, since fluorescent signals must be optimized for every new target panel. As a solution, we established a generic fluorogenic 6-plex reporter set, based on mediator probe technology, that decouples target detection from signal generation.

Eco-evolutionary experience and behavioral innovation in interactions with non-native species.

Behavioral changes play an important role for animals to cope with human-induced rapid environmental change such as biological invasions. The concept of eco-evolutionary experience (EEE) postulates that native species are more strongly impacted by non-native species the more these differ from species they have coevolved with. Also, EEE could influence the degree of innovation in new behaviors shown by native species.

Phage-assisted evolution of highly active cytosine base editors with enhanced selectivity and minimal sequence context preference.

TadA-derived cytosine base editors (TadCBEs) enable programmable C•G-to-T•A editing while retaining the small size, high on-target activity, and low off-target activity of TadA deaminases. Existing TadCBEs, however, exhibit residual A•T-to-G•C editing at certain positions and lower editing efficiencies at some sequence contexts and with non-SpCas9 targeting domains. To address these limitations, we use phage-assisted evolution to evolve CBE6s from a TadA-mediated dual cytosine and adenine base editor, discovering mutations at N46 and Y73 in TadA that prevent A•T-to-G•C editing and improve C•G-to-T•A editing with expanded sequence-context compatibility, respectively.

Fuzzy logic control for watering system.

A two-dimensional finite element (FEM) model was developed to simulate water propagation in soil during irrigation. The first dimension was water distribution depth in soil, and the second dimension was time. The developed model was tested by analyzing water distribution in a conventional (clock-controlled) irrigation model.

Reporter emission multiplexing in digital PCRs (REM-dPCRs): direct quantification of multiple target sequences per detection channel by population specific reporters.

Digital PCRs (dPCRs) are widely used methods for the detection and quantification of rare abundant sequences relevant to fields such as liquid biopsy or oncology. In order to increase the information content and save valuable sample materials, there is a significant need for digital multiplexing methods that are easy to establish, analyse, and interpret, and ideally allow the usage of existing lab equipment. Herein, we present a novel reporter emission multiplexing approach for the digital PCR method (REM-dPCR), which meets these requirements.