Publications by authors named "M A M Groenen"

Basilicata and Apulian (BAS-APU) turkeys, a native population in the Basilicata and Puglia regions of southern Italy, are known for their high meat quality and tolerance to local conditions. Understanding the genomic patterns of BAS-APU turkeys is critical for effective breeding and preservation strategies. In this study, we characterized runs of homozygosity (ROH), and selection signatures using the integrated haplotype score (iHS) and ROH approaches.

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Article Synopsis
  • This research presents a comprehensive pangenome assembly of 27 pig genomes, marking a major milestone in pig genomic data.
  • The analysis highlights how structural variations influence adaptation and breed-specific traits, identifying a crucial gene linked to intramuscular fat and meat quality.
  • These findings emphasize the importance of multi-genome studies in discovering significant genomic traits for agricultural improvement.
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Article Synopsis
  • Italian local turkey populations are crucial for maintaining genetic diversity, and efforts should focus on in vivo preservation methods.
  • Advanced genomic techniques, including whole genome sequencing and genotyping, revealed significant genetic variability and isolation among different turkey populations in Italy.
  • Findings highlight the role of selective sweeps in shaping genetic traits related to heat stress and growth, suggesting potential benefits in adapting to climate change, which can inform conservation and selection strategies for these turkeys.
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The study of protein function and dynamics in their native cellular environment is essential for progressing fundamental science. To overcome the requirement of genetic modification of the protein or the limitations of dissociable fluorescent ligands, ligand-directed (LD) chemistry has most recently emerged as a complementary, bioorthogonal approach for labeling native proteins. Here, we describe the rational design, development, and application of the first ligand-directed chemistry approach for labeling the AAR in living cells.

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Background: Integration of high throughput DNA genotyping and RNA-sequencing data enables the discovery of genomic regions that regulate gene expression, known as expression quantitative trait loci (eQTL). In pigs, efforts to date have been mainly focused on purebred lines for traits with commercial relevance as such growth and meat quality. However, little is known on genetic variants and mechanisms associated with the robustness of an animal, thus its overall health status.

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