Publications by authors named "M A Khodorkovskii"

Article Synopsis
  • Antibiotic streptolydigin (Stl) inhibits bacterial transcription by blocking RNA polymerase's active center, causing long pauses in transcription while not affecting average speed.
  • Stl enhances brief pauses that lead to early stalled states in the transcription process, and surprisingly, factors GreA and GreB increase, rather than reduce, Stl's pausing effects.
  • The study proposes a structural model of the transcription complex that provides insights into Stl's mechanism and suggests new ways to discover potential antibacterial agents.
View Article and Find Full Text PDF

Unlabelled: During infection, the giant phiKZ phage forms a specialized structure at the center of the host cell called the phage nucleus. This structure is crucial for safeguarding viral DNA against bacterial nucleases and for segregating the transcriptional activities of late genes. Here, we describe a morphological entity, the early phage infection (EPI) vesicle, which appears to be responsible for earlier gene segregation at the beginning of the infection process.

View Article and Find Full Text PDF

The SOS response is a condition that occurs in bacterial cells after DNA damage. In this state, the bacterium is able to reсover the integrity of its genome. Due to the increased level of mutagenesis in cells during the repair of DNA double-strand breaks, the SOS response is also an important mechanism for bacterial adaptation to the antibiotics.

View Article and Find Full Text PDF

The giant myovirus phiKZ is characterised by an Inner Body (IB) structure within its capsid, crucial for orderly DNA packaging. The IB is composed of six phiKZ-specific proteins. Notably, four of these IB proteins are co-injected with DNA into the host cell, where they potentially play a role in attacking the bacterial cell.

View Article and Find Full Text PDF