Publications by authors named "Luke J Gosink"

This paper applies the Bayesian Model Averaging statistical ensemble technique to estimate small molecule solvation free energies. There is a wide range of methods available for predicting solvation free energies, ranging from empirical statistical models to ab initio quantum mechanical approaches. Each of these methods is based on a set of conceptual assumptions that can affect predictive accuracy and transferability.

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Article Synopsis
  • The article explores Bayesian Model Averaging (BMA), an ensemble-based technique designed to enhance predictions of protein amino acid pKa values, which are crucial for understanding protein behavior.
  • BMA combines 11 different prediction methods for estimating pKa in staphylococcal nuclease, showing performance improvements between 45% to 73% when compared to individual methods.
  • The study indicates that BMA offers superior predictive accuracy over other ensemble techniques, suggesting a promising approach for future research to improve pKa prediction accuracy while managing computational costs.
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Driven by the ability to generate ever-larger, increasingly complex data, there is an urgent need in the scientific community for scalable analysis methods that can rapidly identify salient trends in scientific data. Query-Driven Visualization (QDV) strategies are among the small subset of techniques that can address both large and highly complex data sets. This paper extends the utility of QDV strategies with a statistics-based framework that integrates nonparametric distribution estimation techniques with a new segmentation strategy to visually identify statistically significant trends and features within the solution space of a query.

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The visualization and analysis of AMR-based simulations is integral to the process of obtaining new insight in scientific research. We present a new method for performing query-driven visualization and analysis on AMR data, with specific emphasis on time-varying AMR data. Our work introduces a new method that directly addresses the dynamic spatial and temporal properties of AMR grids that challenge many existing visualization techniques.

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