Publications by authors named "Lu-jing Li"

Nucleocytoplasmic large DNA viruses (NCLDVs; also called giant viruses), constituting the phylum Nucleocytoviricota, can infect a wide range of eukaryotes and exchange genetic material with not only their hosts but also prokaryotes and phages. A few NCLDVs were reported to encode genes conferring resistance to beta‑lactam, trimethoprim, or pyrimethamine, suggesting that they are potential vehicles for the transmission of antibiotic resistance genes (ARGs) in the biome. However, the incidence of ARGs across the phylum Nucleocytoviricota, their evolutionary characteristics, their dissemination potential, and their association with virulence factors remain unexplored.

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  • - Ecosystem multifunctionality is vital for sustainable human development, and soil viruses play a key role in driving various ecosystem functions, though their relationship with ecosystem diversity hasn't been thoroughly explored.
  • - A study analyzed viral diversity in soil samples from 29 farmlands and 25 forests in China, discovering that specific viral populations (vOTUs) were more closely linked to ecosystem multifunctionality than overall viral diversity.
  • - Key viral populations were identified as better predictors of ecosystem functions related to nutrient cycling, with certain bacterial groups dominating the host communities of these keystone viruses, highlighting the importance of understanding viral roles in ecosystem management.
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  • Scientists studied 333 soil samples from different places in China to learn more about giant viruses found in the soil.
  • They found 533 different types of giant viruses, with many being unique to areas like mine wasteland.
  • The research highlighted that other tiny organisms in the soil play a big role in where these giant viruses are found and how they work with the environment.
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Phosphorus (P) limitation of ecosystem processes is widespread in terrestrial habitats. While a few auxiliary metabolic genes (AMGs) in bacteriophages from aquatic habitats are reported to have the potential to enhance P-acquisition ability of their hosts, little is known about the diversity and potential ecological function of P-acquisition genes encoded by terrestrial bacteriophages. Here, we analyze 333 soil metagenomes from five terrestrial habitat types across China and identify 75 viral operational taxonomic units (vOTUs) that encode 105 P-acquisition AMGs.

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Methylmercury (MeHg) is a notorious neurotoxin, and its production and degradation in the environment are mainly driven by microorganisms. A variety of microbial MeHg producers carrying the gene pair and degraders carrying the gene have been separately reported in recent studies. However, surprisingly little attention has been paid to the simultaneous investigation of the diversities of microbial MeHg producers and degraders in a given habitat, and no studies have been performed to explore to what extent these two contrasting microbial groups correlate with MeHg accumulation in the habitat of interest.

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  • Metalliferous mine tailings ponds have low nutrients, are often acidic, and contain toxic metals, resembling Earth’s early environments.
  • Recent research shows that these ponds have a greater diversity of fungi than previously recognized, with 5842 different fungal types discovered in 33 ponds across China, primarily made up of saprotrophic fungi.
  • Fungal community assembly is influenced by both random and deterministic processes, with key fungal types playing significant roles in nutrient cycling and soil health, highlighting the ecological importance of fungi in extreme environments.
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Background: Pancreatic metastases account for only a small proportion of all pancreatic malignancies. Isolated pancreatic metastasis from renal cell cancer (isPM-RCC) is extremely rare and may be difficult to differentiate from more common primary neoplasms. A history of nephrectomy is crucial for the diagnosis.

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  • The study investigates sulfate-reducing microorganisms (SRMs) in a revegetated acidic mine wasteland, addressing the gap in understanding their role in the terrestrial sulfur cycle under oxic/hypoxic conditions.
  • Researchers recovered 16 high-quality metagenome-assembled genomes (MAGs) of SRMs, with a focus on Acidobacteria and Deltaproteobacteria, and identified three new genera within these groups.
  • Comparative genomic analysis showed differences in gene content related to metabolic functions between Acidobacteria and Deltaproteobacteria SRMs, while metatranscriptomics revealed that most SRMs were actively expressing genes related to oxidative stress and competition for resources.
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  • * A study analyzing 272 metagenomes from global mining sites found an average ARG abundance significantly higher than that in freshwater sediments, with multidrug resistance genes making up 40% of the total.
  • * The research identified high-quality metagenome-assembled genomes (MAGs) that not only carried multiple resistance genes but also expanded the diversity of ARG hosts, revealing potential pathogens in these contaminated environments.
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  • Low soil phosphorus bioavailability is a significant issue for many ecosystems worldwide, prompting a need to explore influencing factors at large scales.
  • This study found that soil microbial biomass carbon and acid phosphatase are key predictors of phosphorus availability, along with total soil phosphorus, and they positively affect phosphorus levels in both agricultural and natural ecosystems across China.
  • Additionally, the presence of microbial genes responsible for these enzymes also enhances phosphorus bioavailability, especially in agricultural areas, underscoring the importance of considering microbial factors in ecosystem management.
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  • Phosphate-solubilizing microbes (PSMs) play a crucial role in the phosphorus cycling necessary for sustainable agriculture, but their diversity and global distribution are largely unknown.
  • This study analyzed data from over 399 papers and 367 soil samples in China, revealing that the density of PSMs in soil correlates more with the total phosphorus content than with soil pH.
  • Of the identified PSM strains, a small percentage have been tested for their effectiveness in enhancing crop growth, particularly showing potential for improving yields in alkaline, phosphorus-deficient soils, highlighting the need for further research on five key PSM genera.
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Rationale: Giant uterine myomas may be life-threatening due to pressure effects on the lungs and other contiguous organs.

Patient Concerns: A 32-year-old pregnant Asian woman was admitted to our hospital early in her pregnancy with a pre-pregnancy history of multiple uterine myomas.

Diagnosis: She was diagnosed with multiple giant uterine myomas in pregnancy.

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Chronic fluid over-hydration is common in dialysis patients. It is associated with mortality and cardiovascular events. Optimal methods for adjusting fluid volume status and ideal dry weight remain uncertain.

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  • The study aimed to enhance the diagnostic accuracy of BI-RADS-US classifications for breast lesions by incorporating real-time elastography (strain ratio) into the assessment of lesions classified as BI-RADS-US 3 and 4.
  • A total of 1,071 lesions were analyzed over five years, and results indicated that the strain ratio method significantly improved the sensitivity, specificity, and accuracy of diagnoses for these lesions.
  • The findings suggest that integrating elastography into the BI-RADS-US system could help reduce unnecessary biopsies and provide better risk assessments for patients.
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Aim: To explore the expression profiles of microRNAs (miRNAs), long non-coding RNAs (lncRNAs), and mRNAs in oesophageal squamous cell carcinoma (ESCC) in order to construct an oesophageal cancer-specific competing endogenous RNA (ceRNA) network.

Methods: In this work, the expression data of miRNAs, lncRNAs, and mRNAs in ESCC were obtained. An oesophageal cancer-specific ceRNA network was then constructed and investigated.

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Aims: To investigate the therapeutic effect of baicalin treatment in chronic ulcerative colitis (UC), and explore the potential anti-inflammation mechanism(s) via IL-33 pathway.

Main Methods: UC model were established by giving three cycles of 5-day 2% dextran sodium sulfate (DSS) with two intervals of 14-day recovery in mice, totaling 43days. At the 13th day of the UC modeling, mice received baicalin at doses of 50, 100, or 150mg/kg, respectively.

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On the basis of results of our previous studies and the findings of other scholars, the most common histologic type of false-positive diagnosis with strain elastography (SE) was papilloma. The objectives of our study were to evaluate whether SE could contribute to conventional ultrasound differentiation between benign and malignant papillary lesions and between papillary lesions and other common benign breast lesions. Data on 89 papillary lesions at our hospital, including 74 benign and 15 malignant papillary lesions, were included in our study.

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Background: This study aimed to confirm whether strain ratio should be added after evaluation of lesions with 5-point elasticity scoring for differentiating benign and malignant breast lesions on ultrasonographic elastography(UE).

Materials And Methods: From June 2010 to March 2012, 1080 consecutive female patients with breast lesions were recruited into a multicenter retrospective study, which involved 8 centers across China. Each institutional ethic review board approved the study, and all the patients gave written informed consent.

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Purpose: To evaluate the additive diagnostic performance of ultrasound elastography (UE) to ultrasound (US) with the 2003 or 2013 Breast Imaging Reporting and Data System (BI-RADS)-US classification systems for the differentiation of benign and malignant breast lesions.

Methods: From June 2010 to December 2012, 738 women with 770 breast lesions were recruited into this retrospective study. Breast lesions were evaluated separately by US, UE, and both.

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Objectives: The purpose was to evaluate whether BI-RADS (the Breast Imaging Recording and Data System) combined with UE (ultrasound elastography) could improve the differentiation and characterization of benign and malignant breast lesions by comparing with BI-RADS.

Methods: A total of 1080 patients with 1194 breast lesions were studied retrospectively at 8 different institutions from 3 geographic areas across China (North, South, and West) from June 2010 to March 2012. Each institutional ethic review board approved the study and all patients gave written informed consent.

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Objective: To investigate the association between the level of serum testosterone and atherosclerosis in middle-aged and elderly men.

Methods: We conducted a population-based study of 413 males aged 40-75 years in a community in Guangzhou. We obtained the sociodemographic characteristics, clinical data, physical measurements, and laboratory results of sex hormones, blood glucose, and blood lipid of the subjects.

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The purpose of this study was to analyze the ultrasonic elastography features of phyllodes tumors of the breast comparing with fibroadenomas. A retrospective database was queried for the patients diagnosed as phyllodes tumors and fibroadenomas at Sun Yat-sen Memorial Hospital from January 2008 to August 2012. Three hundred and fifty lesions from 323 consecutive patients were included in the study.

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Objective: To investigate the preparation process of total coumarins from Laportea bulbifera.

Methods: The optimum condition for the extraction of total coumarins was studied using the orthogonal test, and the extracts was purled with different kinds of macroporous resins. The content of total coumarins was detected by ultraviolet spectrophotometry.

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  • The study investigates the impact of total coumarins from Urtica dentata on colitis induced by dextran sulfate sodium in mice.
  • Mice treated with total coumarins experienced less weight loss, lower levels of inflammation markers IL-6 and IFN-gamma, and increased anti-inflammatory cytokines IL-10 and TGF-beta1.
  • The findings suggest that total coumarins have an anti-inflammatory effect, improving colitis symptoms by modulating inflammatory protein expressions and cytokine levels.
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Ethnopharmacological Relevance: Urtica dentata Hand (UDH), the root of Laportea bulbifera (Sieb. et. Zucc.

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