His-oriented peptide hydrolysis promoted by cis-[Pt(en)(H2O)2]2+: a new specific peptide cleavage site.

The new specific hydrolysis of histidine-containing peptides promoted by cis-[Pt(en)(H(2)O)(2)](2+) was investigated by electrospray ionization mass spectrometry (ESI-MS) and nuclear magnetic resonance spectrometry (NMR). MS determination demonstrated that cis-[Pt(en)(H(2)O)(2)](2+) anchors to AcGHG with the stoichiometry of either 1:1 or 2:1 (Pt/peptide), but only with 1:1 stoichoimetry to AcGHL. Cis-[Pt(en)(H(2)O)(2)](2+) is able to promote the cleavage of the first downstream peptide bond from histidine at 60 degrees C and pH 2.

Mass spectrometry assisted assignments of binding and cleavage sites of copper(II) and platinum(II) complexes towards oxidized insulin B chain.

Interaction of cis-[Pt(en)(H2O)2]2+ and [CuL(H2O)]2+, where L is 2-[bis(2-aminoethyl)amino]ethanol, with oxidized insulin B chain in molar ratio of 1 : 1, 1 : 2 and 1 : 3 at pH 2.5 and 40 degrees C has been investigated by electrospray ionization mass spectrometry (ESI-MS) and tandem mass spectrometry (MS/MS). The results show that the binding sites of the two complexes with oxidized insulin B chain are terminal NH2, imidazole groups of His5 and His10.

Comprehensive density functional theory study on serine and related ions in gas phase: conformations, gas phase basicities, and acidities.

Density functional theory (DFT) calculations have been performed to investigate the gas-phase conformations of serine and its three related ions (serineH(+), serine(-), and serine(2-)). The full ensemble of possible conformations, 324 conformations for serine, 108 for serineH(+), 162 for serine(-) and 54 for serine(2-), were first surveyed at B3LYP/6-31G level, and then the obtained unique conformations were further refined at B3LYP/6-311+G level. From full optimizations, 74 unique conformations for seine, 14 for serineH(+), 11 for serine(-), and 4 for serine(2-) were located, and their relative energies were also determined at B3LYP/6-311+G level.

Theoretical studies on vibrational spectra of some mixed carbonyl-halide complexes of Osmium(II).

The vibrational spectra of Os(CO)(6)(2+) and some of its mixed carbonyl-halide complexes, cis-Os(CO)(2)X(4)(2-), fac-Os(CO)(3)X(3)(-) and Os(CO)(5)X(+) (X=F, Cl, Br and I), have been systematically investigated by ab initio RHF and density functional B3LYP methods with LanL2DZ and SDD basis sets. The calculated vibrational frequencies of complexes Os(CO)(6)(2+), cis-Os(CO)(2)X(4)(2-) and fac-Os(CO)(3)X(3)(-) are evaluated via comparison with the experimental values. In infrared frequency region, the C-O stretching vibrational frequencies calculated at B3LYP level with two basis sets are in good agreement with the observed values with deviations less than 5%.

Theoretical studies on vibrational spectra of some halides of group IVB elements.

The vibrational spectra of group IVB elements halides MX4 (M=Ti(IV), Zr(IV), Hf(II); X=F, Cl, Br and I), have been investigated by ab initio RHF, MP2 and density functional theory B3LYP method with LanL2DZ basis sets. The optimized geometries, calculated vibrational frequencies and Far-IR intensities of MX4 are evaluated via comparison with experimental data. The vibrational frequencies, calculated by these methods, are compared to each other.

Monolayer formation of alkyl chain-containing phosphoric acid amphiphiles at the air/water (pH 5.6) interface: influence of temperature and cations.

In the four studied monoalkyl phosphoric acids (n-C(12)H(25)OPO(OH)(2), MDP; n-C(14)H(29)OPO(OH)(2), MTP; n-C(16)H(33)OPO(OH)(2), MHP; and n-C(18)H(37)OPO(OH)(2)MOP), only MOP can form an insoluble monolayer at the air/water interface (pH 5.6), suggesting that the longer alkyl chain (> or =C(18)) is essential for the formation of insoluble monolayers. On the contrary, all four corresponding dialkyl phosphoric acids ((n-C(12)H(25)O)(2)PO(OH), DDP; (n-C(14)H(29)O)(2)PO(OH), DTP; (n-C(16)H(33)O)(2)PO(OH), DHP; and (n-C(18)H(37)O)(2)PO(OH) DOP) can form insoluble monolayers, with only the pi-A isotherm of DDP showing a phase transition plateau at 25 degrees C.

Ab initio and DFT studies on vibrational spectra of some halides of group IIIB elements.

The vibrational spectra of some group IIIB elements halides MX(3) and their dimmers, M(2)X(6) (M=Sc(III), Y(III), La(III); X=F, Cl, Br, I), have been systematically investigated by ab initio restricted Hartree-Fock (RHF) and density functional B3LYP methods with LanL2DZ and SDD basis sets. The optimized geometries and calculated vibrational frequencies are evaluated via comparison with experimental values. The vibrational frequencies, calculated by two methods with different basis sets, are compared to each other.

Determination of binding sites in carboplatin-bound cytochrome c using electrospray ionization mass spectrometry and tandem mass spectrometry.

Interaction of carboplatin with cytochrome c (Cyt. c) has been investigated by electrospray ionization mass spectrometry (ESI-MS) and tandem mass spectrometry (MS/MS). ESI-MS studies revealed that the ring-opened adducts of carboplatin with Cyt.

Ab initio studies on vibrational spectra of Ni(II), Pd(II), and Pt(II) complexes of M'X4(2-) and M'OS3(2-) (M' = Mo, W; X = O, S).

The vibrational spectra of MM'2X8(2-) and trans-MM'2S6O2(2-) (M = Ni(II), Pd(II), Pt(II); M' = Mo, W; X = O, S) are calculated using ab initio method at RHF/LanL2DZ level. The calculated vibrational frequencies of MM'2S8(2-) and trans-MM'2O2S6(2-) are evaluated via comparison with experimental data. The results obtained by this method have the deviation <5% for M'S and MS stretching vibrational frequencies, however, relatively higher deviation is obtained for M'O stretching vibrational frequencies.

Synergic effect of two metal centers in catalytic hydrolysis of methionine-containing peptides promoted by dinuclear palladium(II) hexaazacyclooctadecane complex.

The species obtained by the reaction of [Pd2([18]aneN6)Cl2](ClO4)2(where [18]aneN6 is 1,4,7,10,13,16-hexaazacyclooctadecane) with AgBF4 have been determined by electrospray ionization mass spectrometry (ESI-MS) to be an equilibrium mixture of three major types of dinuclear Pd(II) complex cations, [Pd2(mu-O)([18]aneN6)]2+, [Pd2(mu-OH)([18]aneN6)]3+ and [Pd2(H2O)(OH)([18]aneN6)](3+), in aqueous solution. The hydroxo-group-bridged one, [Pd2(mu-OH)([18]aneN6)]3+, is a dominant species, whose crystal structure has been obtained. The crystal structure of [Pd2(mu-OH)([18]aneN6)](ClO4)3 shows that each Pd(II) ion in the dinuclear complex is tetra-coordinated by three nitrogen atoms and one hydroxo group bridge in a distorted square configuration.

Interactions of platinum(II) complexes with sulfur-containing peptides studied by electrospray ionization mass spectrometry and tandem mass spectrometry.

Reactions of two platinum(II) complexes, cis-[Pt(NH3)2(H2O)2]2+ (Pt1) and cis-[Pt(en)(H2O)2]2+ (Pt2), with several sulfur-containing peptides, have been investigated by electrospray ionization mass spectrometry (ESI-MS) and tandem mass spectrometry (MS/MS). The species produced in the reactions were detected with ESI-MS, and MS/MS analysis was performed to probe structural information. Collision-induced dissociation revealed different dissociation pathways for the main reaction products of the two platinum(II) complexes with the same peptides.

Ab initio and DFT studies on vibrational spectra of some mixed carbonyl-halide complexes of ruthenium(II).

The vibrational spectra of Ru(CO)6(2+) and some of its mixed carbonyl-halide complexes, cis-Ru(CO)2X4(2-), fac-Ru(CO)3X3- and Ru(CO)5X+ (X = F, Cl, Br and I), have been systematically investigated by ab initio RHF and density functional B3LYP methods with LanL2DZ and SDD basis sets. The calculated vibrational frequencies of complexes Ru(CO)6(2+), cis-Ru(CO)2X4(2-) and fac-Ru(CO)3X3- are evaluated via comparison with the experimental values. In the infrared frequency region, the C-O stretching vibrational frequencies calculated at B3LYP level with two basis sets are in good agreement with the observed values with deviations less than 5%.

Binding sites of [Ru(bpy)2(H2O)2](BF4)2 with sulfur- and histidine-containing peptides studied by electrospray ionization mass spectrometry and tandem mass spectrometry.

The composition and binding sites of cis-[Ru(II)(bpy)2]2+-bound sulfur-containing peptides of Met-Arg-Phe-Ala, glutathione and oxidized glutathione, and also histidine-containing peptide of oxidized insulin B chain, were investigated by electrospray ionization mass spectrometry (ESI-MS) and tandem mass spectrometry (MS/MS). The composition of Ru(II)-containing peptides was precisely determined by ESI-MS, zoom scan and simulation of isotope distribution patterns. MS/MS analysis shows that, in sulfur-containing peptides, the Ru(II) complex prefers to anchor to a carboxyl group, although some other potential binding sites of thiol, thioether and N-terminal amino groups present in these peptides, and in oxidized insulin B chain, Ru(II) first anchors to His10, then either to the hydroxyl group of Thr27 or to the carboxyl group of Ala30.

Ab initio and density functional theory studies on vibrational spectra of palladium (II) and platinum (II) complexes of methionine and histidine: effect of theoretical methods and basis sets.

The vibrational spectra of methionine and histidine-containing palladium (II) and platinum (II) complexes, cis-M(Met)X2 and cis-M(His)X2 (M = Pd and Pt; X = F, Cl, Br and I; Met = methionine, His = histidine), have been systematically investigated by ab initio Restricted Hartree-Fock (RHF) and density functional B3LYP methods with LanL2DZ and SDD basis sets. The geometries of cis-Pd(Met)Cl2, cis-Pt(Met)Cl2, cis-Pd(His)Cl2 and cis-Pt(His)I2 optimized and vibrational frequencies and IR intensities of cis-M(Met)Cl2 and cis-M(His)Cl2 (M = Pd and Pt) calculated are evaluated via comparison with the experimental values. The vibrational frequencies calculated show that the methods, rather than basis sets, affect the accuracy of the calculation.

Imidazolidinium-based robust crypt with unique selectivity for fluoride anion.

A new imidazolidinium based receptor exhibiting unique affinity and high selectivity for fluoride anion through steric requirements and the cooperativity of multiple intramolecular binding, has been designed, synthesized and structurally characterized.

Novel polynuclear platinum adducts detected during the reactions of [Pt(Met-S,N)Cl2] with gamma-glutathione and L-cysteine.

The reactions of platinum(II) complexes with thiol containing molecules are highly relevant to the mechanism of action of platinum-based drugs. This work presents the electrospray mass spectrometry (ESMS) and NMR results on the reactions of [Pt(l-MetH-S,N)Cl(2)] (l-MetH: l-methionine) with gamma-glutathione (GSH) and l-cysteine (l-Cys) at different pH and different molar ratios. Polymeric species such as [Pt(2)(micro-SG-S)(2)(Met-S,N)(2)], [Pt(3)(micro-SG-S)(4)(Met-S,N)(2)], [Pt(4)(micro-SG-S)(6)(Met-S,N)(2)] and [Pt(5)(micro-SG-S)(8)(Met-S,N)(2)] (l-Met: deprotonated l-methionine) were detected and were stable for long hours.

Theoretical studies on vibrational spectra of some halides of Group IIB elements.

The vibrational spectra of Group IIB elements halides MX2 and their dimers M2X4 (M=Zn(II), Cd(II) and Hg(II); X=F, Cl, Br and I) have been systematically investigated by ab initio RHF and B3LYP methods with LanL2MB, LanL2DZ and SDD basis sets. The optimized geometries, calculated vibrational frequencies are evaluated via comparison with the experimental data. The vibrational frequencies, calculated by these methods with different basis sets, are compared to each other too.

Interaction of palladium(II) and platinum(II) complexes with microperoxidase-11 studied by electrospray mass spectrometry and MS/MS analysis.

Interactions of cis-[Pd(en)(H(2)O)(2)](2+) (en, ethylenediamine) and cis-[Pt(NH(3))(2)(H(2)O)(2)](2+) with microperoxidase-11 (MP-11) in a molar ratio of 1:1 or 2:1 at pH 1.4 were investigated via electrospray mass spectrometry and MS/MS analysis at room temperature and at 40 degrees C with an incubation time of 2 or 3 days. The composition of the Pd(II)- and Pt(II)-anchored MP-11 was confirmed on the basis of the precise molecular mass and the simulated isotope distribution pattern.

Regioselective cleavage of myoglobin with copper(II) compounds at neutral pH.

Selective hydrolytic cleavage of myoglobin was studied with CuCl2, Cu(ClO4)2, Cu(AC)2, and binuclear Cu(II) complexes of 3,6,9,16,19,22-hexaaza-6,19-bis (2-hydroxyethyl)-tricyclo- [22,2,2,2(11,14)]-triaconta-1,11,13,24,27,29-hexaene (1) and 3,6,9,16,19,22-hexaaza-tricyclo-[22,2,2,2(11,14)]-triaconta- 1,11,13,24,27,29-hexaene (2). The sites of cleavage were precisely determined by LC-ESIMS and further confirmed by an MS/MS method through fragmentation from both the N-terminal and C-terminal. The peptide bonds of Gln91-Ser92 and Ala94-Thr95 were remarkably cleaved by Cu(II) anchored to the side chain of the His93 residue.

Theoretical studies on vibrational spectra of mixed cyanide-halide complexes of platinum(IV) and palladium(IV).

The vibrational spectra of mixed cyanide-halide complexes, M(CN)4X 2 2- and M(CN)5X2- (M=Pt and Pd; X=F, Cl, Br and I), have been systematically investigated by ab initio RHF, B3LYP and MP2 methods with LanL2DZ and SDD basis sets. The calculated vibrational frequencies of platinum complexes are evaluated via comparison with the experimental values. In the infrared frequency region, the C--N stretching vibrational frequencies calculated at B3LYP level with two basis sets are in good agreement with the observed values with deviations, -16-4 cm(-1) for Pt(CN)4X 2 2- and -18 to -2 cm(-1) for Pt(CN)5X2-.

The binary adduct of 3,6,9,16,19,22-hexaazatricyclo[22.2.2.211,14]triaconta-11,13,24,26(1),27,29-hexaene and benzene-1,2,4,5-tetracarboxylic acid.

The crystals of the title salt, 6,21-diaza-3,9,18,24-tetraazoniatricyclo[22.2.2.

Tetrakis[(4-aminopyridinio)acetato-kappa O]diaquamanganese(II) diperchlorate.

In the centrosymmetric title complex, [Mn(C(7)H(8)N(2)O(2))(4)(H(2)O)(2)](ClO(4))(2), the Mn(II) ion is in an octahedral environment, with the equatorial plane being defined by the O atoms of four monodentate carboxylate groups, and the octahedron being completed by two trans-coordinated water molecules. There are intramolecular hydrogen bonds between the coordinated water molecules and the non-coordinated O atoms of the carboxylate groups. Hydrogen bonds between the amino groups and the carboxylate groups of neighbouring molecules generate a layered hydrogen-bonded network.

Ab initio study on far-infrared spectra of dihalodiammine complexes of palladium(II) and platinum(II).

The far-infrared spectra of dihalodiammine complexes of Pd(II) and Pt(II) are calculated using ab initio method at RHF/LANL2DZ level. The calculated vibrational frequencies are in good agreement with the experimental ones except for M-N stretching frequencies in cis-M(NH3)2X2 complexes, and the reason for the deviation is discussed.