Publications by authors named "Linyu Shi"

Duplication of methyl-CpG-binding protein 2 (MECP2) gene causes MECP2 duplication syndrome (MDS). To normalize the duplicated MECP2 in MDS, we developed a high-fidelity Cas13Y (hfCas13Y) system capable of targeting the MECP2 (hfCas13Y-gMECP2) messenger RNA for degradation and reducing protein levels in the brain of humanized MECP2 transgenic mice. Moreover, the intracerebroventricular adeno-associated virus (AAV) delivery of hfCas13Y-gMECP2 in newborn or adult MDS mice restored dysregulated gene expression and improved behavior deficits.

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  • - STRs are widely used for human identification in forensics, and nanopore sequencing offers high portability and data throughput, but traditional preparation methods are not fast enough for field use.
  • - A new transposase-based rapid library preparation method was developed that allows for human identification while maintaining practicality, featuring an 18-STRs multiplex amplification panel with larger amplicons.
  • - In tests with portable instruments, the process requiring 10.5 hours yielded reliable data for identifying individuals from 24 samples, achieving an accuracy of 95.36%, demonstrating nanopore sequencing's potential for field forensic applications.
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Background: Despite advancements in the treatment landscape for psoriasis (PsO) and psoriatic arthritis (PsA), some patients may not achieve the desired disease improvement due to undertreatment. Understanding patient perspectives on treatment expectations can inform patient-centered decisions and enhance treatment satisfaction.

Objective: To describe patient-identified treatment goals and expectations for managing psoriatic disease.

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  • The study aimed to investigate inverse publication bias (IPB) in adverse events using the SMART Safety dataset, emphasizing the need for proper statistical analysis methods and considering effect direction in assessments.
  • A cross-sectional analysis was done on 277 meta-analyses, revealing that approximately 13.7-16.2% showed evidence of IPB, with fair to moderate agreement found in visual assessment consistency among evaluators.
  • The findings highlight the significance of recognizing IPB in adverse events research and suggest that both quantitative and qualitative methods should be included to better understand and address this bias.
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  • The study examines the effectiveness and safety of risankizumab for treating moderate-to-severe plaque psoriasis, focusing on racial and ethnic disparities in diagnosis and representation in clinical trials.
  • A total of 897 patients participated, with significant reductions in psoriasis severity and improvements in quality of life reported, particularly among Black or African American and Hispanic or Latino patients.
  • Results suggest that risankizumab shows similar efficacy across different racial and ethnic groups without any new safety concerns arising during the treatment.
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  • Heterophyllin B (HB) is a cyclic peptide that shows promise in inhibiting ovarian cancer cell growth and promoting apoptosis, but its specific effects and mechanisms were previously unclear.
  • The study utilized various assays to analyze HB's impact on ovarian cancer cells, revealing that it reduces cell viability, proliferation, migration, and invasion while enhancing apoptosis, suggesting a significant anti-cancer effect.
  • Results indicated that HB operates by down-regulating the NRF2/HO-1 signaling pathway, and in animal models, HB treatment slowed tumor growth and reduced markers associated with cancer progression, positioning it as a potential therapeutic agent for ovarian cancer.
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  • * Conducted with 345 students over four weeks, the research found that a positive body image can lead to more physical activity, with exercise identity acting as a partial mediator.
  • * The findings emphasize the importance of fostering body appreciation and managing stress to boost physical activity participation among college students.
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As the evolutionary ancestor of Cas9 nuclease, IscB proteins serve as compact RNA-guided DNA endonucleases and nickases, making them strong candidates for base editing. Nevertheless, the narrow targeting scope limits the application of IscB systems; thus, it is necessary to find more IscBs that recognize different target-adjacent motifs (TAMs). Here, we identified 10 of 19 uncharacterized IscB proteins from uncultured microbes with activity in mammalian cells.

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In medical research, publication bias (PB) poses great challenges to the conclusions from systematic reviews and meta-analyses. The majority of efforts in methodological research related to classic PB have focused on examining the potential suppression of studies reporting effects close to the null or statistically non-significant results. Such suppression is common, particularly when the study outcome concerns the effectiveness of a new intervention.

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Duchenne muscular dystrophy (DMD) affecting 1 in 3500-5000 live male newborns is the frequently fatal genetic disease resulted from various mutations in DMD gene encoding dystrophin protein. About 70% of DMD-causing mutations are exon deletion leading to frameshift of open reading frame and dystrophin deficiency. To facilitate translating human DMD-targeting CRISPR therapeutics into patients, we herein establish a genetically humanized mouse model of DMD by replacing exon 50 and 51 of mouse Dmd gene with human exon 50 sequence.

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DNA base editors enable direct editing of adenine (A), cytosine (C), or guanine (G), but there is no base editor for direct thymine (T) editing currently. Here we develop two deaminase-free glycosylase-based base editors for direct T editing (gTBE) and C editing (gCBE) by fusing Cas9 nickase (nCas9) with engineered human uracil DNA glycosylase (UNG) variants. By several rounds of structure-informed rational mutagenesis on UNG in cultured human cells, we obtain gTBE and gCBE with high activity of T-to-S (i.

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Introduction: The presence (vs absence) of enthesitis/dactylitis is associated with greater psoriatic arthritis (PsA) activity and reduced health-related quality of life. Risankizumab, an interleukin 23 antagonist, demonstrated superior treatment efficacy over placebo in patients with PsA, including enthesitis/dactylitis. Herein, we report the efficacy of risankizumab on complete resolution of enthesitis and/or dactylitis and improvements in patient-reported outcomes in patients with PsA.

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Interspecies blastocyst complementation (IBC) provides a unique platform to study development and holds the potential to overcome worldwide organ shortages. Despite recent successes, brain tissue has not been achieved through IBC. Here, we developed an optimized IBC strategy based on C-CRISPR, which facilitated rapid screening of candidate genes and identified that Hesx1 deficiency supported the generation of rat forebrain tissue in mice via IBC.

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Identification and the time since deposition (TsD) estimation of body fluid stains from a crime scene could provide valuable information for solving the cases and are always difficult for forensics. Microbial characteristics were considered as a promising biomarker to address the issues. However, changes in the microbiota may damage the specific characteristics of body fluids.

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  • Otoferlin (OTOF) gene mutations are a leading cause of hearing loss, particularly affecting around 3% of prelingual deafness cases in the Spanish population due to a specific mutation (c.2485C>T).
  • This study introduces an advanced RNA base editor (emxABE) delivered via a modified AAV vector, achieving nearly 100% success in targeting inner hair cells and significantly restoring auditory function in a mouse model.
  • Results showed that after treatment, hearing capabilities in the mice improved to levels comparable to normal mice and maintained this level of function for at least 7 months, suggesting a promising approach not only for OTOF-related hearing loss but also for other genetic conditions caused by similar mutations
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Current DNA base editors contain nuclease and DNA deaminase that enables deamination of cytosine (C) or adenine (A), but no method for guanine (G) or thymine (T) editing is available at present. Here we developed a deaminase-free glycosylase-based guanine base editor (gGBE) with G editing ability, by fusing Cas9 nickase with engineered N-methylpurine DNA glycosylase protein (MPG). By several rounds of MPG mutagenesis via unbiased and rational screening using an intron-split EGFP reporter, we demonstrated that gGBE with engineered MPG could increase G editing efficiency by more than 1500 fold.

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The prolyl hydroxylation of hypoxia-inducible factor 1α (HIF-1α) mediated by the EGLN-pVHL pathway represents a classic signalling mechanism that mediates cellular adaptation under hypoxia. Here we identify RIPK1, a known regulator of cell death mediated by tumour necrosis factor receptor 1 (TNFR1), as a target of EGLN1-pVHL. Prolyl hydroxylation of RIPK1 mediated by EGLN1 promotes the binding of RIPK1 with pVHL to suppress its activation under normoxic conditions.

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As a miniature RNA-guided endonuclease, IscB is presumed to be the ancestor of Cas9 and to share similar functions. IscB is less than half the size of Cas9 and thus more suitable for in vivo delivery. However, the poor editing efficiency of IscB in eukaryotic cells limits its in vivo applications.

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  • Researchers developed a new RNA base editor called compact and efficient RNA base editor (ceRBE) that replaces the larger dCas13 protein, improving its in vivo application capabilities.
  • The ceRBE efficiently edits adenine-to-inosine (A-to-I) and cytidine-to-uridine (C-to-U) while minimizing off-target effects in HEK293T cells.
  • In a humanized mouse model for Duchenne muscular dystrophy, ceRBE successfully repaired a mutation and restored gene expression, indicating its potential for treating genetic diseases.
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The microbial communities on shoe soles and shoeprints could carry microbial information about where someone walked. This is possible evidence to link a suspect in a crime case to a geographic location. A previous study had shown that the microbiota found on shoe soles depend on the microbiota of the soil on which people walk.

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The type V-F CRISPR-Cas12f system is a strong candidate for therapeutic applications due to the compact size of the Cas12f proteins. In this work, we identify six uncharacterized Cas12f1 proteins with nuclease activity in mammalian cells from assembled bacterial genomes. Among them, OsCas12f1 (433 aa) from Oscillibacter sp.

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Drug addiction can powerfully and chronically damage human health. Detoxification contributes to health recovery of the body. It is well established that drug abuse is associated with poor oral health in terms of dental caries and periodontal diseases.

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The conversion of non-neuronal cells to neurons is a promising potential strategy for the treatment of neurodegenerative diseases. Recent studies have reported that shRNA-, CasRx-, or ASO-mediated Ptbp1 suppression could reprogram resident astrocytes to neurons. However, some groups have disputed the interpretation of the data underlying the reported neuron conversion events.

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Approximately 10% of monogenic diseases are caused by nonsense point mutations that generate premature termination codons (PTCs), resulting in a truncated protein and nonsense-mediated decay of the mutant mRNAs. Here, we demonstrate a mini-dCas13X-mediated RNA adenine base editing (mxABE) strategy to treat nonsense mutation-related monogenic diseases via A-to-G editing in a genetically humanized mouse model of Duchenne muscular dystrophy (DMD). Initially, we identified a nonsense point mutation (c.

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In order to solve the stress problem in laparoscopic hiatal hernia repair of children, improve surgical safety, and reduce surgical risk, this study compared the perioperative changes of epinephrine, norepinephrine, IL-6, IL-10, and hemodynamics in children undergoing laparoscopic surgery under intravenous general anesthesia and general anesthesia combined with an epidural block. In this study, 40 children aged 1-3 years who planned to undergo laparoscopic ortopexy and those who planned to undergo laparoscopic high ligation of hernia sac, aged 23.84 1.

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