iResNetDM: An interpretable deep learning approach for four types of DNA methylation modification prediction.

Motivation: Although several computational methods for predicting DNA methylation modifications have been developed, two main limitations persist: 1) All of the models are currently confined to binary predictors, which merely determine the presence or absence of DNA methylation modifications and thus prevent comprehensive analyses of the interrelations among varied modification types. Multi-class classification models for RNA modifications have been developed, and a comparable approach for DNA is essential. 2) Few previous studies offer adequate explanations of how models make decisions, instead relying on the extraction and visualization of attention matrices, which have identified few motifs and do not provide sufficient insights into the model decision-making process.

3D Shape Completion on Unseen Categories: A Weakly-Supervised Approach.

3D shapes captured by scanning devices are often incomplete due to occlusion. 3D shape completion methods have been explored to tackle this limitation. However, most of these methods are only trained and tested on a subset of categories, resulting in poor generalization to unseen categories.

DNA Repair-Responsive Engineered Whole Cell Microbial Sensors for Sensitive and High-Throughput Screening of Genotoxic Impurities.

Genotoxic impurities (GTIs) occurred in drugs, and food and environment pose a threat to human health. Accurate and sensitive evaluation of GTIs is of significance. Ames assay is the existing gold standard method.

Source Free Semi-Supervised Transfer Learning for Diagnosis of Mental Disorders on fMRI Scans.

The high prevalence of mental disorders gradually poses a huge pressure on the public healthcare services. Deep learning-based computer-aided diagnosis (CAD) has emerged to relieve the tension in healthcare institutions by detecting abnormal neuroimaging-derived phenotypes. However, training deep learning models relies on sufficient annotated datasets, which can be costly and laborious.

Federated Multi-Task Learning for Joint Diagnosis of Multiple Mental Disorders on MRI Scans.

Objective: Deep learning (DL) techniques have been introduced to assist doctors in the interpretation of medical images by detecting image-derived phenotype abnormality. Yet the privacy-preserving policy of medical images disables the effective training of DL model using sufficiently large datasets. As a decentralized computing paradigm to address this issue, federated learning (FL) allows the training process to occur in individual institutions with local datasets, and then aggregates the resultant weights without risk of privacy leakage.

EGFI: drug-drug interaction extraction and generation with fusion of enriched entity and sentence information.

Motivation: The rapid growth in literature accumulates diverse and yet comprehensive biomedical knowledge hidden to be mined such as drug interactions. However, it is difficult to extract the heterogeneous knowledge to retrieve or even discover the latest and novel knowledge in an efficient manner. To address such a problem, we propose EGFI for extracting and consolidating drug interactions from large-scale medical literature text data.

Using Contextual Learning to Improve Diagnostic Accuracy: Application in Breast Cancer Screening.

Clinicians need to routinely make management decisions about patients who are at risk for a disease such as breast cancer. This paper presents a novel clinical decision support tool that is capable of helping physicians make diagnostic decisions. We apply this support system to improve the specificity of breast cancer screening and diagnosis.

[Location selection for Shenyang urban parks based on GIS and multi-objective location allocation model].

Based on geographic information system (GIS) technology and multi-objective location-allocation (LA) model, and in considering of four relatively independent objective factors (population density level, air pollution level, urban heat island effect level, and urban land use pattern), an optimized location selection for the urban parks within the Third Ring of Shenyang was conducted, and the selection results were compared with the spatial distribution of existing parks, aimed to evaluate the rationality of the spatial distribution of urban green spaces. In the location selection of urban green spaces in the study area, the factor air pollution was most important, and, compared with single objective factor, the weighted analysis results of multi-objective factors could provide optimized spatial location selection of new urban green spaces. The combination of GIS technology with LA model would be a new approach for the spatial optimizing of urban green spaces.