Publications by authors named "LiJie Song"

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  • This study presents 121 new genomes of spore-forming Bacillales collected from various global habitats, using advanced sequencing technologies.
  • The focus is on their ability to produce diverse secondary metabolites, which have important applications in agriculture, biotechnology, and medicine.
  • The research identifies 1,176 biosynthetic gene clusters (BGCs) and aims to enhance understanding of Bacillales' genetic potential for producing valuable bioactive compounds.
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  • - The study assessed the safety and effectiveness of combining camrelizumab and apatinib in patients with advanced esophageal squamous cell carcinoma (ESCC) who previously received immune checkpoint inhibitors (ICIs).
  • - Out of 49 patients treated, the confirmed objective response rate was 10.2%, with a disease control rate of 69.4% and median progression-free survival of 4.6 months.
  • - The results indicated that the response rate was modest and did not show significant improvement, though the treatment had a manageable safety profile with no treatment-related deaths reported.
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  • PD-1+ T cells in the peripheral blood of tumor patients show potential for cancer therapy but face challenges due to immunosuppressive signaling and limited growth.
  • Research indicates that while PD-1+ and PD-1- T cells have similar clonal overlap, PD-1+ T cells demonstrate enhanced cytotoxicity-related gene expression and stronger anti-tumor activity.
  • A novel therapy using modified PD-1+ T cells with a PD-1/CD28 fusion receptor showed safety and efficacy in four cancer patients, with one experiencing a complete response and the others having stable disease.
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A new method of efficiently transforming water vapor into hydrogen was investigated by dielectric barrier discharge (DBD) loaded with bamboo carbon bed structured by fibrous material in an argon medium. Hydrogen productivity was measured in three different reactors: a non-loaded DBD (N-DBD), a bamboo carbon (BC) bed DBD (BC-DBD), and a quartz wool (QW)-loaded BC DBD (QC-DBD). The effects of the quality ratio of BC to QW and relative humidity on hydrogen productivity were also investigated in QC-DBD at various flow rates.

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  • The study introduces CNVseq-AOH, a new method that detects absence of heterozygosity (AOH) using ultra-low coverage whole genome sequencing (LP-WGS), which is lower than typical methods, by integrating population-based data and advanced algorithms like recurrent neural networks (RNN).
  • The CNVseq-AOH method demonstrated high accuracy in identifying AOH regions, achieving concordance rates of 96.23% for autosomes and discovering additional AOHs when tested on genomic data from 409 samples from the 1000 Genomes Project.
  • In clinical trials, CNVseq-AOH successfully identified all known AOH regions in six patients, showcasing its potential as a
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  • A phase I study in China assessed the combination of toripalimab, a programmed death 1 inhibitor, and surufatinib, an angio-immuno kinase inhibitor, for patients with advanced solid tumors that had not responded to standard treatments.
  • The study involved 60 patients across three cohorts (gastric/gastroesophageal junction adenocarcinoma, esophageal squamous cell carcinoma, and biliary tract carcinoma), reporting objective response rates of 31.6%, 30.0%, and 11.1%, respectively.
  • Preliminary results suggest that this combination therapy has promising anti-tumor effects and an acceptable safety profile, indicating the need for further research in larger clinical trials.
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Background: Urinary tract infection (UTI) associated with poses a serious threat for inpatients. This study aimed to describe the genomic characteristics of causing UTI in a tertiary-care hospital in Beijing, China.

Methods: A total of 20 strains collected from 2020 to 2021 were performed whole-genome sequencing.

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Background: Esophageal squamous cell carcinoma (ESCC) is the main subtype of esophageal cancer. Current therapeutic effect is far from satisfaction. Hence, identifying susceptible genes and potential targets is necessary for therapy of ESCC patients.

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  • A phase II study in China investigated the combination therapy of surufatinib and toripalimab in patients with advanced neuroendocrine tumors (NETs) and neuroendocrine carcinomas (NECs) who had not responded to standard treatments.
  • Forty patients participated, with objective response rates of 21.1% for NETs and 23.8% for NECs/MiNENs; the median duration of response was approximately 7.1 months for NETs and 4.1 months for NECs/MiNENs.
  • The treatment showed antitumor activity with a tolerable safety profile, prompting further research into this combination for advanced NECs, which
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Bacillus species are ubiquitous in nature and have tremendous application potential in agriculture, medicine, and industry. However, the individual species of this genus vary widely in both ecological niches and functional phenotypes, which, hence, requires accurate classification of these bacteria when selecting them for specific purposes. Although analysis of the 16S rRNA gene has been widely used to disseminate the taxonomy of most bacterial species, this gene fails proper classification of Bacillus species.

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Background: Low-pass genome sequencing (LP GS) has shown distinct advantages over traditional methods for the detection of mosaicism. However, no study has systematically evaluated the accuracy of LP GS in the detection of mosaic aneuploidies and copy number variants (CNVs) in prenatal diagnosis. Moreover, the influence of sequencing depth on mosaicism detection of LP GS has not been fully evaluated.

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Purpose: This multicenter, open-label, phase Ib/II study aimed to assess the efficacy and safety of cadonilimab, a humanized, tetravalent, bispecific antibody plus lenvatinib in first-line treatment of advanced hepatocellular carcinoma (aHCC).

Methods: Patients with histologically confirmed aHCC were included to receive either 6 mg/kg cadonilimab every 2 weeks plus lenvatinib (cohort A) or 15 mg/kg cadonilimab every 3 weeks plus lenvatinib (cohort B). The primary endpoint was objective response rate (ORR) by RECIST v1.

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Objective: There is an unmet need to improve clinical outcomes for patients with recurrent/metastatic cervical cancer. Checkpoint inhibitors represent a promising treatment strategy. We evaluated the safety and anti-tumor activity of zimberelimab, an anti-programmed cell death protein-1 antibody, in patients with previously treated, recurrent, metastatic cervical cancer.

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Background: Limited studies have observed the prognostic value of CT images for esophageal neuroendocrine carcinoma (NEC) due to rare incidence and low treatment experience in clinical. In this study, the pretreatment enhanced CT texture features and clinical characteristics were investigated to predict the overall survival of esophageal NEC.

Methods: This retrospective study included 89 patients with esophageal NEC.

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Background: Acute lung injury (ALI) is a prevalent complication of sepsis with high mortality rate. Saikosaponin D (SSD) is a triterpenoid saponin that has been reported to alleviate sepsis-triggered renal injury in mice. Nonetheless, the therapeutic effect of SSD on sepsis-evoked ALI is unclarified.

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Formaldehyde as one of the typical indoor pollutants has long been concerned as it can pose a threat to human health. TiO/CNTs composite with oxygen vacancies and multitype carbon doping (C-TiO/CNTs) was fabricated using nonthermal plasma for the photocatalytic degradation of formaldehyde. The maximum degradation rate of formaldehyde was 93% and 83% via the new catalyst (with 5% CNTs content) under solar and visible light, respectively.

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Fe-mediated autotrophic denitrification (ADN) can be suppressed by iron oxide coverage resulting from Fe corrosion. The mixotrophic denitrification (MDN) coupling Fe-mediated ADN with heterotrophic denitrification (HDN) can circumvent the weakening of Fe-mediated ADN over operation time. But the interaction between HDN and Fe-mediated ADN for nitrogen removal of secondary effluent with deficient bioavailable organics remains unclear.

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Formal multidisciplinary team (MDT) discussions in clinical practice require time and space but have unclear survival benefits for advanced gastrointestinal cancer patients. Our study aimed to investigate the long-term survival of patients with advanced gastrointestinal cancer after MDT decision. From June 2017 to June 2019, continuous MDT discussions on advanced gastrointestinal cancer were conducted in 13 medical centers in China.

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Municipal solid waste management and disposal in China have significantly evolved since 2000. Due to China's vast land area and significant socioeconomic and geographic disparities, nationwide waste management strategies need to be further evaluated. This study quantified the effect of social, economic, and geographic drivers on municipal waste disposal activities in 31 provincial-level administrative regions from 2003 to 2020, by establishing a methodology integrated by two-way fixed effects regression model, panel random forest, and spatial Durbin model.

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Background: With advances in massive parallel sequencing (MPS) technology, whole-genome sequencing (WGS) has gradually evolved into the first-tier diagnostic test for genetic disorders. However, deployment practice and pipeline testing for clinical WGS are lacking.

Methods: In this study, we introduced a whole WGS pipeline for genetic disorders, which included the entire process from obtaining a sample to clinical reporting.

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Background: Low-pass genome sequencing (LP GS) is an alternative to chromosomal microarray analysis (CMA). However, validations of LP GS as a prenatal diagnostic test for amniotic fluid are rare. Moreover, sequencing depth of LP GS in prenatal diagnosis has not been evaluated.

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Patients with biliary tract cancer (BTC) were associated with poor prognosis and limited therapeutic options after first-line therapy currently. In this study, we sought to evaluate the feasibility and tolerability of sintilimab plus anlotinib as the second-line treatment for patients with advanced BTC. Eligible patients had histologically confirmed locally advanced unresectable or metastatic BTC and failed after the first-line treatment were recruited.

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