Publications by authors named "Li-Yuan Fang"

Background: Long noncoding RNAs (lncRNAs) play a critical role in gastric cancer (GC) progression and metastasis. However, research comprehensively exploring tissue-derived lncRNAs for predicting peritoneal recurrence in patients with GC remains limited. This study aims to investigate the transcriptional landscape of lncRNAs in GC with peritoneal metastasis (PM) and to develop an integrated lncRNA-based score to predict peritoneal recurrence in patients with GC after radical gastrectomy.

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Peroxide test strip (PTS) has been widely used for the point-of-care testing (POCT), but its poor sensitivity is a big obstacle for analyzing trace target. Herein, a triple signal amplifying platform integrating the liposome enrichment, the hybridization chain reaction (HCR) circuit, and the image analysis method was constructed to enhance the visual readout of PTS for the sensitive detection of adenosine triphosphate (ATP), an important biomarker of food spoilage. In the presence of ATP, the HCR amplifier was firstly initiated on the surface of magnetic beads (MBs), inducing a large number of glucose oxidase (GOD) imbedded liposomes to be attached.

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  • - Recent research has focused on improving the luminol-HO electrochemiluminescence (ECL) system to tackle issues of instability and toxicity associated with traditional methods.
  • - Researchers created nickel molybdate sub-1 nm nanowires (NiMoO S1 NWs) with large surface areas to enhance oxygen evolution reactions, which produce reactive oxygen species (ROS) to boost ECL efficiency.
  • - The study demonstrates the effectiveness of NiMoO S1 NWs in generating high ROS levels, leading to a sensitive ECL biosensor capable of detecting SARS-CoV-2 nucleocapsid proteins.
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The development of novel catalysts for the rapid detoxification of sulfur mustard holds paramount importance in the field of military defense. In this work, titanium dioxide-phosphomolybdic acid sub-1 nm nanobelts (TiO/PMA SNBs) are employed as effective catalysts for the ultra-fast degradation of mustard gas simulants (2-chloroethyl ethyl sulfide, CEES) with 100% selectivity and a half-life (t, time required for 50% conversion) as short as 12 s, which is the fastest time to the best of the knowledge. Even in dark conditions, this material can still achieve over 90% conversion within 5 min.

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  • Chronic exposure to interferon-γ (IFN-γ) in cancers leads to tryptophan shortage via the IDO-kynurenine pathway, which results in abnormal peptides being produced through ribosomal frameshifting and codon reassignment.
  • In EBV-positive gastric cancer (GC), infiltrating lymphocytes secrete IFN-γ, increasing IDO1 expression and depleting tryptophan, which promotes the production of tryptophan-to-phenylalanine (W>F) substitutants.
  • The mTOR/eIF4E signaling pathway plays a crucial role in this process, as inhibiting it can reduce W>F substitutant production and improve antigen presentation,
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  • Perioperative chemotherapy remains the standard treatment for locally advanced gastric cancer, and a study (NEOSUMMIT-01) is exploring the effectiveness of adding a PD-1 inhibitor called toripalimab to this regimen.
  • In the study, patients were randomly assigned to receive either standard chemotherapy or a combination of toripalimab and chemotherapy, with results showing that the latter group had a significantly higher rate of tumor regression (44.4% vs. 20.4%).
  • Additionally, the combination treatment led to a greater rate of complete pathological response and had similar rates of surgical complications and treatment-related side effects compared to chemotherapy alone.
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The 2023 update of the Chinese Society of Clinical Oncology (CSCO) Clinical Guidelines for Gastric Cancer focuses on standardizing cancer diagnosis and treatment in China, reflecting the latest advancements in evidence-based medicine, healthcare resource availability, and precision medicine. These updates address the differences in epidemiological characteristics, clinicopathological features, tumor biology, treatment patterns, and drug selections between Eastern and Western gastric cancer patients. Key revisions include a structured template for imaging diagnosis reports, updated standards for molecular marker testing in pathological diagnosis, and an elevated recommendation for neoadjuvant chemotherapy in stage III gastric cancer.

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Scene graph generation (SGG) and human-object interaction (HOI) detection are two important visual tasks aiming at localising and recognising relationships between objects, and interactions between humans and objects, respectively. Prevailing works treat these tasks as distinct tasks, leading to the development of task-specific models tailored to individual datasets. However, we posit that the presence of visual relationships can furnish crucial contextual and intricate relational cues that significantly augment the inference of human-object interactions.

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  • Circulating tumor DNA (ctDNA) can help doctors understand if stomach cancer might come back after treatment, especially in patients with stage II/III gastric cancer.
  • In a study with 100 patients, those who had ctDNA after surgery or chemotherapy had a much higher chance of their cancer returning.
  • Using ctDNA measurements along with other tests showed better predictions for cancer recurrence than using just tissue samples alone.
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There are more than 200 subtypes of human papillomavirus (HPV), and high-risk HPVs are a leading cause of cervical cancer. Identifying the genotypes of HPV is significant for clinical diagnosis and cancer control. Herein, we used programmable and modified DNA as the backbone to construct fluorescent genotyping nanodevice for HPV subtype distinction.

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  • Recent studies on PD-L1 expression in gastric cancer show mixed outcomes, especially regarding patients with peritoneal metastasis.
  • Immunohistochemistry was conducted on 147 gastric cancer patients to evaluate PD-L1 expression using a combined positive score (CPS) and analyze its impact on survival.
  • Results indicated that higher PD-L1 expression (CPS ≥ 10) was linked to significantly better overall survival compared to lower expression levels, highlighting its potential as a favorable prognostic factor alongside palliative chemotherapy.
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Challenges remained in precisely real-time monitoring of apoptotic molecular events at the subcellular level. Herein, we developed a new type of intelligent DNA biocomputing nanodevices (iDBNs) that responded to mitochondrial microRNA-21 (miR-21) and microRNA-10b (miR-10b) simultaneously which were produced during cell apoptosis. By hybridizing two hairpins (H1 and H2) onto DNA nanospheres (DNSs) that had been previously modified with mitochondria-targeted triphenylphosphine (TPP) motifs, iDBNs were assembled in which two localized catalytic hairpins self-assembly (CHA) reactions occurred upon the co-stimulation of mitochondrial miR-21 and miR-10b to perform AND logic operations, outputting fluorescence resonance energy transfer (FRET) signals for sensitive intracellular imaging during cell apoptosis.

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DNA nanosheets (DNSs) have been utilized effectively as a fluorescence anisotropy (FA) amplifier for biosensing. But, their sensitivity needs to be further improved. Herein, CRISPR-Cas12a with strong -cleavage activity was utilized to enhance the FA amplification ability of DNSs for the sensitive detection of miRNA-155 (miR-155) as a proof-of-principle target.

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Understanding the structural transformation of photocatalysts under illumination provides detailed insights to solve the poisoning of photocatalysts. In this study, the O-induced transformation of crystalline structure in nanosized Zr-porphyrin metal organic frames (ZrTCPP MOFs) is confirmed by a dark-field microscopy (DFM) system. Under continuous illumination, the energy of excited ZrTCPP transfers to oxygen in the surroundings and generates O, which causes the nanosized crystal ZrTCPP to change into the amorphous state The crystalline structure of ZrTCPP corresponds to the multiple resonance peaks of the scattering spectra, and the amorphous structure corresponds to the single scattering peak.

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  • - This study developed molecularly imprinted polymers (MIPs) on electrospun nanofiber membranes made from PEI and PVA to specifically detect thiodiglycol (TDG), a marker for sulfur mustard poisoning, for point-of-care testing.
  • - Concentrated gold nanoparticles (AuNPs) were used to signal the presence of TDG, creating a visible red color through interaction between TDG and the AuNPs, while silver-enhanced solutions improved sensitivity for better detection.
  • - The method showed a strong relationship between the color change and TDG concentration ranging from 0.1 ng/mL to 1.0 μg/mL, with a detection limit of 38 pg/mL
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Objectives: To study the efficacy and safety of rituximab combined with chemotherapy in the treatment of children and adolescents with mature B-cell non-Hodgkin's lymphoma (B-NHL) through a Meta analysis.

Methods: The databases including PubMed, Embase, the Cochrane Library, ClinicalTrials.gov, Web of Science, China National Knowledge Infrastructure, Wanfang Data, and Weipu were searched to obtain 10 articles on rituximab in the treatment of mature B-NHL in children and adolescents published up to June 2022, with 886 children in total.

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Monitoring the fluctuation of adenosine triphosphate (ATP) level in living cells could promote the understanding of metabolic pathways and cell biology. Here, we proposed a highly sensitive, selective, and biocompatible nanoprobe with core-shell structure, namely Au NBPs@ZIF-8 composed by gold nanobipyramids (Au NBPs) and zeolitic imidazolate framework-8 (ZIF-8), for monitoring intracellular ATP level fluctuation in living cells. Because the coordination between ATP and Zn (the metal node of ZIF-8) was much stronger than that between 2-methylimidazole and Zn, which caused the decomposition of the ZIF-8 shell and the exposure of Au NBPs in the presence of ATP, it led to the change of the localized surface plasmon resonance scattering properties of nanoprobes under dark-field microscopy.

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How to avoid biased predictions is an important and active research question in scene graph generation (SGG). Current state-of-the-art methods employ debiasing techniques such as resampling and causality analysis. However, the role of intrinsic cues in the features causing biased training has remained under-explored.

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Graph representation learning (GRL) is critical for graph-structured data analysis. However, most of the existing graph neural networks (GNNs) heavily rely on labeling information, which is normally expensive to obtain in the real world. Although some existing works aim to effectively learn graph representations in an unsupervised manner, they suffer from certain limitations, such as the heavy reliance on monotone contrastiveness and limited scalability.

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Plasmon-driven catalysis of metal nanostructures has garnered wide interest. Here, a photogenerated plasmonic hot-electron painting strategy was reported to form Au@Pt composite nanoparticles (Au@Pt NPs) with high catalytic reactivity without using reducing agents. Au nanoparticles, including Au nanospheres (Au NSs), Au nanorods (Au NRs), and Au nanobipyramids (Au NBPs), generated hot electrons under localized surface plasmon resonance (LSPR) excitation, which made the platinum precursor reduced as a consequence that Pt(0) atoms were painted on the surface of Au NPs to form an asymmetric Pt shell outside the plasmonic Au core.

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Intraparticle ion motions are critical to the structure and properties of nanomaterials, but rarely disclosed. Herein, in situ visualization of ion motions in a single nanoparticle is presented by dark-field microscopy imaging, which shows HgCl -induced structural transformation of amorphous selenium nanoparticles (SeNPs) with the main composition of Se . Owing to the high binding affinity with selenium and coulomb interactions, Hg ions can permeate into the interior of SeNPs, making the amorphous Se turn to polycrystalline Hg Se Cl .

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  • The study investigates the relationship between pyroptosis (a type of cell death) and the tumor immune microenvironment (TIME) in gastric cancer to better understand their interactions.
  • Researchers identified distinct groups based on pyroptosis-related characteristics and created a pyroptosis risk score to predict immunotherapy responses and identify potential cancer treatments.
  • Findings show that a low pyroptosis risk score correlates with favorable immune cell profiles and better patient outcomes, validating its effectiveness as a prognostic tool for survival and immunotherapy response in gastric cancer.
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Background: We aimed to assess whether the Response Evaluation Criteria in Solid Tumors (RECIST)-based objective response rate (ORR), disease control rate (DCR) and progression-free survival (PFS) could serve as surrogate endpoints for overall survival (OS) in immune-oncology (IO) trials of advanced gastro-esophageal (GE) carcinoma.

Methods: Randomized controlled trials (RCTs) of IO that reported RECIST-based endpoints and OS in advanced GE carcinoma were screened. Surrogacy of endpoints for OS was assessed based on the correlation between endpoints with OS (arm-level), and between treatment effects on endpoints (trial-level).

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Generating photo-realistic images from labels (e.g., semantic labels or sketch labels) is much more challenging than the general image-to-image translation task, mainly due to the large differences between extremely sparse labels and detail rich images.

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