Publications by authors named "Li Yu Liu"

Article Synopsis
  • - Marchantia polymorpha, a model plant for bryophytes, demonstrates how RNA silencing helps early land plants cope with high temperatures, through the unique ARGONAUTE1 ortholog gene (MpAGO1) regulated by specific microRNAs (miR11707.1 and miR11707.2).
  • - Analysis revealed that MpAGO1 is less selective for various small RNA species compared to its counterpart in Arabidopsis (AtAGO1), indicating complexities in microRNA species specificity that require further investigation.
  • - The study showed that while MpAGO1 mRNA decreases with temperature changes, the stability of MpAGO1 protein and its miRNAs boosts the activity of the RNA-induced silencing complex (RISC
View Article and Find Full Text PDF

Heart rhythm complexity (HRC), a subtype of heart rate variability (HRV), is an important tool to investigate cardiovascular disease. In this study, we aimed to analyze serial changes in HRV and HRC metrics in patients with inferior ST-elevation myocardial infarction (STEMI) within 1 year postinfarct and explore the association between HRC and postinfarct left ventricular (LV) systolic impairment. We prospectively enrolled 33 inferior STEMI patients and 74 control subjects and analyzed traditional linear HRV and HRC metrics in both groups, including detrended fluctuation analysis (DFA) and multiscale entropy (MSE).

View Article and Find Full Text PDF

Objectives: To investigate the genotypes of the pathogenic gene and the characteristics of clinical phenotypes in children with Alport syndrome (AS).

Methods: A retrospective analysis was performed for the genetic testing results and clinical data of 19 AS children with gene mutations.

Results: Among the 19 children with AS caused by gene mutations, 1 (5%) carried a new mutation of the gene, i.

View Article and Find Full Text PDF

Arbuscular mycorrhizal fungi are obligate symbionts that transfer mineral nutrients to host plants through arbuscules, a fungal structure specialized for exchange for photosynthetic products. and , which encode the C subunits of nuclear factor Y (NF-Y) family in are induced specifically by arbuscular mycorrhizal symbiosis (AMS). A previous study showed that and are activated in cortical cells of mycorrhizal roots, but the gene functions were unknown.

View Article and Find Full Text PDF

Primary aldosteronism is the most common form of secondary hypertension and induces various cardiovascular injuries. In aldosterone-producing adenoma (APA), the impact of somatic mutations on arterial stiffness excluding the influence of confounding factors is uncertain. We enrolled 213 APA patients who were scheduled to undergo adrenalectomy.

View Article and Find Full Text PDF

The indica ecotypes, IR64, an elite drought-susceptible variety adapted to irrigated ecosystem, and Apo (IR55423-01 or NSIC RC9), a moderate drought-tolerant upland genotype together with their hybrid (IR64 × Apo) were exposed to non- and water-stress conditions. By sequencing (RNA-seq) these genotypes, we were able to map genes diverging in cis and/or trans factors. Under non-stress condition, cis dominantly explains (11.

View Article and Find Full Text PDF

Rice blast is a serious threat to global rice production. Large-scale and long-term cultivation of rice varieties with a single blast resistance gene usually leads to breakdown of resistance. To effectively control rice blast in Taiwan, marker-assisted backcrossing was conducted to develop monogenic lines carrying different blast resistance genes in the genetic background of an elite japonica rice cultivar, Kaohsiung 145 (KH145).

View Article and Find Full Text PDF

Our computational developments and analyses on experimental images are designed to evaluate the effectiveness of chemical spraying via unmanned aerial vehicle (UAV). Our evaluations are in accord with the two perspectives of color-complexity: color variety within a color system and color distributional geometry on an image. First, by working within RGB and HSV color systems, we develop a new color-identification algorithm relying on highly associative relations among three color-coordinates to lead us to exhaustively identify all targeted color-pixels.

View Article and Find Full Text PDF

N6-methyladenosine (mA) modification has been reported as a critical regulator of gene transcript expression. Although mA modification plays important roles in tumor development, its role in therapeutic resistance remains unknown. In this study, we aimed to examine the expression level of mA-modification related proteins and elucidate the effect of mA-related proteins on radiation response in nasopharyngeal carcinoma (NPC).

View Article and Find Full Text PDF

Cnaphalocrocis medinalis is a major insect pest of rice in Asia. A few defensive enzymes were reported to show higher activities in a resistant rice line (Qingliu) than in a susceptible rice line (TN1) upon leaffolder infestation. However, the overall molecular regulation of the rice defense response against leaffolder herbivory is unknown.

View Article and Find Full Text PDF

Background: The pandemic threat of influenza has attracted great attention worldwide. To assist public health decision-makers, new suites of tools are needed to rapidly process and combine viral information retrieved from public-domain databases for a better risk assessment.

Results: Using our recently developed FluConvert and IniFlu software, we automatically processed and rearranged sequence data by standard viral nomenclature, determined the group-related consensus sequences, and identified group-specific polygenic signatures.

View Article and Find Full Text PDF
Article Synopsis
  • The study investigates the chromatin landscape of Marchantia polymorpha, a bryophyte that diverged from vascular plants around 400 million years ago, to understand genome organization and histone modification patterns in early land plants.
  • It finds that the relationship between active histone marks and gene expression is conserved across land plants, but Marchantia shows unique features in its repetitive sequences and transposons compared to flowering plants.
  • The research suggests that H3K27me3 plays a significant role in heterochromatin function in early plants, indicating its ancestral importance in transposon silencing, differing from its role in flowering plants where it primarily represses protein-coding genes.
View Article and Find Full Text PDF

Background Cardiovascular disease is the leading cause of morbidity and mortality in patients with end-stage renal disease. Heart rhythm complexity analysis has been shown to be useful in predicting outcomes in various diseases; however, data on patients with end-stage renal disease are limited. In this study, we analyzed the association between heart rhythm complexity and long-term cardiovascular outcomes in patients with end-stage renal disease receiving peritoneal dialysis.

View Article and Find Full Text PDF

Background: The coconut rhinoceros beetle, Oryctes rhinoceros, is a major pest of palm crops in tropical Asia and the Pacific Islands. Little molecular data exists for this pest, impeding our ability to develop effective countermeasures and deal with the species' growing resistance to viral biocontrols. We present the first molecular biology analyses of this species, including a metagenomic assay to understand the microbiome of different sections of its digestive tract, and a transcriptomics assay to complement the microbiome data and to shed light on genes of interest like plant cell wall degrading enzymes and immunity and xenobiotic resistance genes.

View Article and Find Full Text PDF

Background: In the past two decades, biologists have been able to identify the gene signatures associated with various phenotypes through the monitoring of gene expressions with high-throughput biotechnologies. These gene signatures have in turn been successfully applied to drug development, disease prevention, crop improvement, etc. However, ignoring the interactions among genes has weakened the predictive power of gene signatures in practical applications.

View Article and Find Full Text PDF

Brown root rot (BRR), caused by the white rot fungus , is an epidemic disease of diverse broadleaved and coniferous tree species in many tropical and subtropical regions. Flooding and trenching control measures are difficult to implement, and chemical controls can have an adverse impact on ecosystems. Previous studies have provided in vitro evidence for the potential use of spp.

View Article and Find Full Text PDF

Intrahepatic cholangiocarcinoma (ICC) ranks as the second most malignant type of primary liver cancer with a high degree of incidence and a very poor prognosis. Fat mass and obesity-associated protein (FTO) functions as an eraser of the RNA mA modification, but its roles in ICC tumorigenesis and development remain unknown. We showed here that the protein level of FTO was downregulated in clinical ICC samples and cell lines and that FTO expression was inversely correlated with the expression of CA19-9 and micro-vessel density (MVD).

View Article and Find Full Text PDF

As an irreversible and perennial process, aging is accompanied by functional and morphological declines in organs. Generally, aging liver exhibits a decline in volume and hepatic blood flow. Even with a preeminent regenerative capacity to restore its functions after liver cell loss, its biosynthesis and metabolism abilities decline, and these are difficult to restore to previous standards.

View Article and Find Full Text PDF

An efficient and convenient methodology for catalyst-free cross-dehydrogenative coupling of imidazoheterocycles with glyoxal hydrates in good yields was developed. This methodology exhibits a broad substrate scope and excellent functional group tolerance and offers a straightforward means to produce different heterocycles such as imidazoheterocyclic quinoxaline, imidazoheterocyclic hydantoin and imidazoheterocyclic α-keto ketamine under relatively mild conditions. Biological evaluation showed that the most potent compound 3m possesses significant in vitro antiproliferative activities against human-derived lung cancer cell lines with an IC50 value of 14.

View Article and Find Full Text PDF

Abdominal aorta calcification (AAC) has been associated with clinical outcomes in peritoneal dialysis (PD) patients. Heart rhythm complexity analysis has been shown to be a promising tool to predict outcomes in patients with cardiovascular disease. In this study, we aimed to analyze the association between heart rhythm complexity and AAC in PD patients.

View Article and Find Full Text PDF

Two isoforms of human Polycomb-like protein 3 (hPCL3) have been reported as components of the nuclear Polycomb repressive complex 2 (PRC2), with the short isoform (hPCL3s) showing a dominant cytoplasmic localization. The function of cytoplasmic hPCL3s has, however, not been addressed. In this study, we report that hPCL3s is upregulated in clinical hepatocellular carcinoma (HCC) samples and its expression correlated with HCC clinical features.

View Article and Find Full Text PDF
Article Synopsis
  • A new fungal clade, Trichoderma formosa, produces a peptide called Epl1 that enhances plant immunity when pre-treated on Nicotiana benthamiana, providing resistance against Tomato mosaic virus (ToMV).
  • The research utilized deep sequencing to analyze transcriptomes, revealing that Epl1 is a 736 nucleotide-long transcript coding for a 12-kDa peptide.
  • Challenges in identifying crucial genes for Epl1-mediated immunity were addressed through bioinformatics and gene network analysis, highlighting important signaling pathways and candidate genes for further research on plant immune responses.
View Article and Find Full Text PDF

Salt intake is highly associated with cardiac structure in patients with primary aldosteronism (PA). We investigated the association among dietary salt intake, aldosterone and left ventricular mass in patients with PA. We enrolled 158 patients with PA and 158 patients with essential hypertension.

View Article and Find Full Text PDF