Ancient evolutionary origins of hepatitis E virus in rodents.

Hepatitis E virus (HEV; family ) infections cause >40,000 human deaths annually. Zoonotic infections predominantly originate from ungulates and occasionally from rats, highlighting the zoonotic potential of rodent-associated hepeviruses. We conducted host genomic data mining and uncovered two genetically divergent rodent-associated hepeviruses, and two bat-associated hepeviruses genetically related to known bat-associated strains.

A new species of Neohylomys (Eulipotyphla: Galericidae) from northern Vietnam.

A new species of gymnure of the genus Neohylomys is described from northern Vietnam based on morphological and molecular differences. The species Neohylomys vietnamensis sp. nov.

Orientational effects in the polarized absorption spectra of molecular aggregates.

We present a detailed theoretical analysis of polarized absorption spectra and linear dichroism of cyanine dye aggregates whose unit cells contain two molecules. The studied threadlike ordered system with a molecular exciton delocalized along its axis can be treated as two chains of conventional molecular aggregates, rotated relative to each other at a certain angle around the aggregate axis. Our approach is based on the general formulas for the effective cross section of light absorption by a molecular aggregate and key points of the molecular exciton theory.

Phylogeny of the Dipus sagitta Species Complex by Nuclear Gene Sequences.

The northern three-toed jerboa Dipus sagitta had long been considered to be a single polytypic species. High genetic diversity of D. sagitta was earlier revealed on the basis of several mitochondrial and nuclear genes, and several separate species were hypothesized to occur within the taxon.

Multilocus Analysis of Phylogenetic Relationships in the Crocidura suaveolens Sensu Lato Species Complex: A Comparison with Mitochondrial Data.

Multilocus analysis was for the first time used to study the phylogeny of the Crocidura suaveolens s. l. species complex.

Continuous absorption and emission of light by the heteronuclear rare gas (ArXe) and (KrXe) ions.

Studies of radiative transitions between ground and charge transfer excited terms of heteronuclear rare-gas (ArXe) and (KrXe) ions with small and moderate dissociation energies (D =179 and D =389 meV) are reported. Potential energy curves and dipole transition matrix elements are evaluated using ab initio calculations based on the CASSCF method followed by the NEVPT2 treatment and perturbative description of relativistic effects as implemented in the ORCA suite. We develop an efficient approach for the calculations of Boltzmann-averaged cross sections, rate constants, and absorption and emission coefficients associated with the integral contributions of bound-bound and bound-free transitions from a manifold of rovibrational states of the (RgXe) ion.

Fractal Structure of Brain Electrical Activity of Patients With Mental Disorders.

This work was aimed at a comparative analysis of the degree of multifractality of electroencephalographic time series obtained from a group of healthy subjects and from patients with mental disorders. We analyzed long-term records of patients with paranoid schizophrenia and patients with depression. To evaluate the properties of multifractal scaling of various electroencephalographic time series, the method of maximum modulus of the wavelet transform and multifractal analysis of fluctuations without a trend were used.

Manifestation of the anisotropic properties of the molecular J-aggregate shell in the optical spectra of plexcitonic nanoparticles.

The theoretical studies of light absorption and scattering spectra of the plexcitonic two-layer triangular nanoprisms and three-layer nanospheres are reported. The optical properties of such metal-organic core-shell and core-double-shell nanostructures were previously explained within the framework of pure isotropic models for describing their outer excitonic shell. In this work, we show that the anisotropy of the excitonic shell permittivity can drastically affect the optical spectra of such hybrid nanostructures.

Phylogenetic relations and range history of jerboas of the Allactaginae subfamily (Dipodidae, Rodentia).

Five-toed jerboas of the subfamily Allactaginae comprise several complex taxa occurring over a wide distribution range covering a large part of the Eurasian arid belt. In this study, we employed current methods of molecular phylogenetics based on 15 nuclear genes and the mitochondrial gene cytb to revise relations and systematics within Allactaginae. We also applied species distribution modelling projected on paleo-environmental data to reconstruct the geographic patterns of speciation in Allactaginae.

High diversity of small insectivorous mammals on Qinghai-Tibet Plateau and first description of karyotype for four endemics of China.

Among seven species of the order Eulipotyphla (from southern Gansu and northern Sichuan Provinces, Central China) studied cytogenetically, karyotypes of one talpid species, Uropsilus aff. soricipes (2n = 36, NFa = 54), and three soricid species, Chodsigoa hypsibia (2n = 65, NFa = 66), Sorex cansulus (2n = 42, NFa = 64) and Sorex thibetanus (2n = 42, NFa = 60), are described cytogenetically for the first time. All four species are endemic to China with distribution ranges restricted to the Qinghai-Tibet Plateau and adjacent mountain ranges.

Karyotypic and molecular evidence supports the endemic Tibetan hamsters as a separate divergent lineage of Cricetinae.

The genus status of Urocricetus was defined recently based on morphological and molecular data. Even though the amount of evidence for a separate phylogenetic position of this genus among Cricetinae continues to increase, there is still no consensus on its relationship to other groups. Here we give the first comprehensive description of the U.

Molecular systematics of the species complex: a contribution from historical DNA analysis.

The Tianshan birch mouse is an endemic of the Central Asian mountains and has previously been shown to include several karyomorphs ("Terskey", "Talgar", "Dzungar"); however, the taxonomic status of these forms has remained uncertain. We examined the genetic variation in based on historical DNA samples from museum collections, including the type series. Mitochondrial and nuclear data indicated that the species complex includes two major clades: Northern (N) and Southern (S) ( distance 13%).

Who are you, Griselda? A replacement name for a new genus of the Asiatic short-tailed shrews (Mammalia, Eulipotyphla, Soricidae): molecular and morphological analyses with the discussion of tribal affinities.

The first genetic study of the holotype of the Gansu short-tailed shrew, Thomas, 1912, is presented. The mitochondrial analysis demonstrated that the type specimen of is close to several recently collected specimens from southern Gansu, northern Sichuan and Shaanxi, which are highly distinct from the two species of Asiatic short-tailed shrews of southern Sichuan, Yunnan, and Vietnam, and . Our analysis of four nuclear genes supported the placement of as sister to / , with the level of divergence between these two clades corresponding to that among genera of Soricinae.

Spectral-band replication phenomenon in a single pair of hybrid metal-organic nanospheres and nanodisks caused by plexcitonic coupling.

We study an unusual effect of spectral-band replication in the optical spectra of dimers, consisting of spherical nanoparticles or nanodisks with a silver core and a J-aggregate shell of TDBC-dye. It consists in the emergence of a doubled number of plexcitonic spectral bands compared to the case of a plasmonic dimer and in narrow peaks associated with the resonances of the J-aggregate shell. The plexcitonic bands can be divided into two groups: the "original" bands, accurately reproducing plasmonic peaks, and their "replicas," with a specific mutual arrangement and intensity distributions.

Optical properties of molecular nanocrystals consisting of J-aggregates of anionic and cationic cyanine dyes.

We report results of experimental studies of the photoabsorption, photoluminescent and photoelectric properties of a new type of multilayer molecular nanocrystals, consisting of highly ordered J-aggregates of one anionic and two cationic J-aggregates of cyanine dyes. In contrast to conventional J-aggregated dyes the multichromic nanocrystals synthesized in this work, are capable of efficient light absorption in three excitonic bands of the visible and near-IR spectral ranges. The spectral peak positions in the absorption bands can be controlled by appropriately selecting a set of dyes a molecular crystal is made of.

A broadly distributed species instead of an insular endemic? A new find of the poorly known Hainan gymnure (Mammalia, Lipotyphla).

The Hainan gymnure (Mammalia, Lipotyphla), endemic to Hainan Island (China), is one of the rarest and least-known species within the family Galericidae. The IUCN Red List inferred it as an endangered species due to ongoing population decline caused by natural habitat loss. A recent biodiversity survey has revealed to be rather common in northern Vietnam.

Is the Center of Origin of Long-tailed Hamster Cricetulus longicaudatus Milne-Edwards 1867 (Rodentia, Cricetidae) Located in Tibet?

First data on morphological and mitochondrial variation in the long-tailed hamster Cricetulus longicaudatus is presented. In contrast to genetically monomorphic populations of Mongolia and Tuva, the northeastern part of the Qinghai-Tibetian Plateau was found to harbor several divergent mtDNA lineages. This pattern suggests a recent expansion of the long-tailed hamster to the northern part of its recent range, which started from Tibet, presumably, in the late Middle Pleistocene.

Molecular phylogenetics and taxonomy of dwarf hamsters Cricetulus Milne-Edwards, 1867 (Cricetidae, Rodentia): description of a new genus and reinstatement of another.

The taxonomy of the genus Cricetulus has been controversial. The phylogenetic relationships both within the genus and among Cricetulus lineages and other genera were examined using a set of five nuclear and two mitochondrial genes. The results demonstrate that Cricetulus in its current treatment is a polyphyletic assemblage because the subgenus Urocricetus is phylogenetically unrelated to all other Cricetulus and is a distant sister group to Phodopus.

Cenozoic aridization in Central Eurasia shaped diversification of toad-headed agamas (; Agamidae, Reptilia).

We hypothesize the phylogenetic relationships of the agamid genus to assess how past environmental changes shaped the evolutionary and biogeographic history of these lizards and especially the impact of paleogeography and climatic factors. is one of the most diverse and taxonomically confusing lizard genera. As a key element of Palearctic deserts, it serves as a promising model for studies of historical biogeography and formation of arid habitats in Eurasia.

[Microsatellite loci variation and investigation of gene flow between two karyoforms of Cricetulus barabensis sensu lato (Rodentia, Cricetidae)].

We examine the diversity of six microsatellite loci and partial RAG1 exon of “barabensis” and “pseudogriseus” karyoforms in Cricetulus barabensis sensu lato species complex. A total of 435 specimens from 68 localities ranging from Altai to the Far East are investigated. The results of the population structure analysis (factor analysis and NJ tree based on Nei genetic distances) support subdivision into two well-differentiated clusters corresponding to the two karyoforms.

Karyotype Evolution and Phylogenetic Relationships of Cricetulus sokolovi Orlov et Malygin 1988 (Cricetidae, Rodentia) Inferred from Chromosomal Painting and Molecular Data.

Sokolov's dwarf hamster (Cricetulus sokolovi) is the least studied representative of the striped hamsters (Cricetulus barabensis species group), the taxonomy of which remains controversial. The species was described based on chromosome morphology, but neither the details of the karyotype nor the phylogenetic relationships with other Cricetulus are known. In the present study, the karyotype of C.

Unexpectedly high genetic diversity of the asiatic short-tailed shrews Blarinella (Mammalia, Lipotyphla, Soricidae).

Genetic diversity of the genus Blarinella was studied using one mitochondrial and four nuclear genes as examples. The first genotyping of shrews from the southeast of Gansu province (China), which is a typical habitat of B. griselda, has been performed.

Revision of (Lipotyphla: Soricidae) from Vietnam with comments on taxonomy and biogeography of Asiatic water shrews.

We analyzed the complete mitochondrial cytochrome b (cytb) gene and fragments of four nuclear loci: ApoB, RAG2, IRBP1 and BRCA1. These data allowed us to provide new insights into the diversity of the Asiatic water shrews of Indochina. A new, highly divergent genetic lineage of Chimarrogale was found in southern Vietnam, and this lineage included specimens from the provinces of Kon Tum, Dak Lak, and Lam Dong.

[Variability of Cytochrome b Gene and Adjacent Section of Gene tRNA-Thr of Mitochondrial DNA in the Northern Mole Vole Ellobius talpinus (Mammalia, Rodentia)].

The Northern mole vole E. talpinus, despite its wide distribution, is characterized by a stable karyotype (2n = NF = 54) and slight morphological polymorphism. We made a preliminary analysis of a mitochondrial DNA fragment to clarify the level of genetic variation and differentiation of E.

Phylogenetic position of the Gansu mole Scapanulus oweni Thomas, 1912 and the relationships between strictly fossorial tribes of the family talpidae.

The results of the first molecular study focused on the phylogenetic position of the Gansu mole, Scapanulus oweni are presented. The analysis based on sequences of the mitochondrial cytb gene and five nuclear genes supports the monophyly of the Scalopini tribe including S. oweni and shows that two highly fossorial talpid tribes, Talpini and Scalopini, are not immediate sister taxa.