Publications by authors named "Lacey Plummer"

Context: SOX11 variants cause Coffin-Siris Syndrome (CSS), characterized by developmental delay, hypogonadotropic hypogonadism (HH), skeletal and facial defects.

Objective: To examine the contribution of SOX11 variants to the pathogenesis of Idiopathic Hypogonadotropic Hypogonadism (IHH), a disorder caused by hypothalamic GnRH deficiency.

Setting: The Reproductive Endocrine Unit and the Pediatric Endocrinology Division, Massachusetts General Hospital.

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  • * Two of these genes, TACR3 and MKRN3, are linked to severe disorders related to puberty, suggesting a connection might exist between normal and extreme cases of pubertal timing disorders.
  • * However, research on individuals with idiopathic hypogonadotropic hypogonadism (IHH) showed that while TACR3 had significant genetic links, the other five genes did not, challenging the idea of a continuous genetic risk for pubertal issues
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Context: Activation of fibroblast growth factor receptor 1 (FGFR1) signaling improves the metabolic health of animals and humans, while inactivation leads to diabetes in mice. Direct human genetic evidence for the role of FGFR1 signaling in human metabolic health has not been fully established.

Objective: We hypothesized that individuals with naturally occurring variants ("experiments of nature") will display glucose dysregulation.

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Precision medicine requires precise genetic variant interpretation, yet many disease-associated genes have unresolved variants of unknown significance (VUS). We analyzed variants in a well-studied gene, FGFR1, a common cause of Idiopathic Hypogonadotropic Hypogonadism (IHH) and examined whether regional genetic enrichment of missense variants could improve variant classification. FGFR1 rare sequence variants (RSVs) were examined in a large cohort to (i) define regional genetic enrichment, (ii) determine pathogenicity based on the American College of Medical Genetics/Association for Molecular Pathology (ACMG/AMP) variant classification framework, and (iii) characterize the phenotype of FGFR1 variant carriers by variant classification.

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  • The melanocortin 3 receptor (MC3R) is important for regulating puberty, growth, and lean mass, and its variants may affect pubertal timing in humans.
  • The study aimed to find how often harmful MC3R variants occur in patients with constitutional delay of growth and puberty (CDGP) compared to those with normosmic idiopathic hypogonadotropic hypogonadism (nIHH).
  • Results showed that MC3R loss-of-function variants were more common in CDGP patients, but not in those with nIHH, and such variants were also linked to delayed menarche in a broader UK Biobank cohort.
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Isolated hypogonadotropic hypogonadism (IHH) is a rare disease with hypogonadism and infertility caused by the defects in embryonic migration of hypothalamic gonadotropin-releasing hormone (GnRH) neurons, hypothalamic GnRH secretion or GnRH signal transduction. PROKR2 gene, encoding a G-protein coupled receptor PROKR2, is one of the most frequently mutated genes identified in IHH patients. However, the functional consequences of several PROKR2 mutants remain elusive.

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Pathogenic SRY-box transcription factor 2 (SOX2) variants typically cause severe ocular defects within a SOX2 disorder spectrum that includes hypogonadotropic hypogonadism. We examined exome-sequencing data from a large, well-phenotyped cohort of patients with idiopathic hypogonadotropic hypogonadism (IHH) for pathogenic SOX2 variants to investigate the underlying pathogenic SOX2 spectrum and its associated phenotypes. We identified 8 IHH individuals harboring heterozygous pathogenic SOX2 variants with variable ocular phenotypes.

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  • Congenital hypogonadotropic hypogonadism (HH) is a genetic disorder that affects puberty and fertility, with 10-15% of cases showing potential for reversal.
  • A study of 240 men categorized three groups based on puberty status: fertile eunuchs (FE), absent puberty, and partial puberty; the FE group showed no history of micropenis and had distinctive hormonal profiles.
  • The FE group demonstrated higher levels of gonadotropins and a significant rate of spontaneous reversal, suggesting they experience milder neuroendocrine defects compared to other HH types, highlighting the FE variant as a potential predictor for reversibility in HH.
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Context: Isolated hypogonadotropic hypogonadism (IHH) is phenotypically and genetically heterogeneous.

Objective: This work aimed to determine the correlation between genotypic severity with pubertal and neuroendocrine phenotypes in IHH men.

Methods: A retrospective study was conducted (1980-2020) examining olfaction (Kallmann syndrome [KS] vs normosmic IHH [nHH]), baseline testicular volume (absent vs partial puberty), neuroendocrine profiling (pulsatile vs apulsatile luteinizing hormone [LH] secretion), and genetic variants in 62 IHH-associated genes through exome sequencing (ES).

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Purpose: The study aimed to identify novel genes for idiopathic hypogonadotropic hypogonadism (IHH).

Methods: A cohort of 1387 probands with IHH underwent exome sequencing and de novo, familial, and cohort-wide investigations. Functional studies were performed on 2 p190 Rho GTPase-activating proteins (p190 RhoGAP), ARHGAP35 and ARHGAP5, which involved in vivo modeling in larval zebrafish and an in vitro p190A-GAP activity assay.

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  • The study investigates the genetic causes of isolated hypogonadotropic hypogonadism (IHH) by focusing on the role of copy number variants (CNVs) and their associated phenotypes.
  • Researchers analyzed exome sequencing data from nearly 1,400 IHH patients and their families to find CNVs and single nucleotide variants in known IHH genes.
  • The results showed that about 2% of IHH cases were linked to CNVs, with a significant portion of these cases displaying syndromic phenotypes, signaling a need for advanced genome sequencing to uncover other genetic factors behind IHH.
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Purpose: SOX10 variants previously implicated in Waardenburg syndrome (WS) have now been linked to Kallmann syndrome (KS), the anosmic form of idiopathic hypogonadotropic hypogonadism (IHH). We investigated whether SOX10-associated WS and IHH represent elements of a phenotypic continuum within a unifying disorder or if they represent phenotypically distinct allelic disorders.

Methods: Exome sequencing from 1,309 IHH subjects (KS: 632; normosmic idiopathic hypogonadotropic hypogonadism [nIIHH]: 677) were reviewed for SOX10 rare sequence variants (RSVs).

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Patients often have difficulty understanding genetic test reports. Technical language and jargon can impede comprehension and limit patients using results to act on findings. One potential way to improve patient understanding of genetic test reports is to provide patient-facing materials.

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Context: Functional hypothalamic amenorrhea (HA) is a common, acquired form of hypogonadotropic hypogonadism that occurs in the setting of energy deficits and/or stress. Variability in individual susceptibility to these stressors, HA heritability, and previous identification of several rare sequence variants (RSVs) in genes associated with the rare disorder, isolated hypogonadotropic hypogonadism (IHH), in individuals with HA suggest a possible genetic contribution to HA susceptibility.

Objective: We sought to determine whether the burden of RSVs in IHH-related genes is greater in women with HA than controls.

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Dysfunction of the gonadotropin-releasing hormone (GnRH) axis causes a range of reproductive phenotypes resulting from defects in the specification, migration and/or function of GnRH neurons. To identify additional molecular components of this system, we initiated a systematic genetic interrogation of families with isolated GnRH deficiency (IGD). Here, we report 13 families (12 autosomal dominant and one autosomal recessive) with an anosmic form of IGD (Kallmann syndrome) with loss-of-function mutations in TCF12, a locus also known to cause syndromic and non-syndromic craniosynostosis.

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  • Biallelic pathogenic variants in the gene lead to two rare disorders, Warburg Micro syndrome (WARBM) and Martsolf syndrome (MS), which share symptoms like congenital cataracts, intellectual disability, and hypogonadism.
  • A case study of a woman with these symptoms was conducted, where exome sequencing revealed specific variants that confirmed her diagnosis of MS and highlighted the presence of hypogonadotropic hypogonadism.
  • The findings suggest that variants causing complete loss of the gene's function are linked to severe WARBM, while variants with some preserved function are associated with the milder MS phenotype, expanding our understanding of genotype-phenotype relationships in these conditions.
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  • - The study investigates the relationship between GnRH neurons and olfactory structures by examining patients with congenital anosmia and arhinia, who lack the ability to smell and have missing olfactory structures.
  • - Results showed that while male patients exhibited clear signs of GnRH deficiency, some female patients displayed normal reproductive functions, indicating that olfactory systems may not be essential for GnRH neuron migration and activity.
  • - The findings suggest that GnRH neurons can migrate and function independently of olfactory feedback, shedding light on the complexities of human reproductive biology and development.
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Context: Kallmann syndrome (KS) is a rare, genetically heterogeneous Mendelian disorder. Structural defects in KS patients have helped define the genetic architecture of gonadotropin-releasing hormone (GnRH) neuronal development in this condition.

Objective: Examine the functional role a novel structural defect affecting a long noncoding RNA (lncRNA), RMST, found in a KS patient.

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Context: After completion of puberty a subset of men experience functional hypogonadotropic hypogonadism (FHH) secondary to excessive exercise or weight loss. This phenomenon is akin to hypothalamic amenorrhea (HA) in women, yet little is known about FHH in men.

Objective: To investigate the neuroendocrine mechanisms, genetics, and natural history underlying FHH.

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  • Many Mendelian disorders lack clearly defined genetic causes due to challenges like limited family studies and genetic variability.
  • Gene-based burden testing could help overcome these challenges by comparing rare variant burdens in different genes between affected individuals and controls, utilizing large-scale public sequencing databases like gnomAD to avoid the need for new controls.
  • The study analyzed whole-exome sequencing data from individuals with idiopathic hypogonadotropic hypogonadism, confirming previous gene associations and discovering new ones, while also creating a software tool (TRAPD) for easier gene-based testing using public data.
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Context: Hypothalamic kisspeptin signaling plays a critical role in the initiation and maintenance of reproductive function. Biallelic mutations in the coding sequence of KISS1R (GPR54) have been identified in patients with idiopathic hypogonadotropic hypogonadism, but it is unknown whether biallelic variants can also be associated with related reproductive disorders.

Case Description: A missense homozygous variant (c.

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A major challenge in human genetics is the validation of pathogenicity of heterozygous missense variants. This problem is well-illustrated by PROKR2 variants associated with Isolated GnRH Deficiency (IGD). Homozygous, loss of function variants in PROKR2 was initially implicated in autosomal recessive IGD; however, most IGD-associated PROKR2 variants are heterozygous.

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Congenital hypogonadotropic hypogonadism (CHH) is a rare genetic form of isolated gonadotropin-releasing hormone (GnRH) deficiency caused by mutations in > 30 genes. Fibroblast growth factor receptor 1 () is the most frequently mutated gene in CHH and is implicated in GnRH neuron development and maintenance. We note that a CHH mutation (p.

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