Publications by authors named "Konwar C"

Cheek swabs, heterogeneous samples consisting primarily of buccal epithelial cells, are widely used in pediatric DNA methylation studies and biomarker creation. However, the decrease in buccal proportion with age in adults remains unexamined in childhood. We analyzed cheek swabs from 4626 typically developing children 2-months to 20-years-old.

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Introduction: The placenta produces corticotrophin releasing hormone (CRH), which rises exponentially in maternal plasma across pregnancy. CRH plays a functional role in fetal development, labor initiation, and the regulation of gestational length. We aimed to understand how maternal plasma CRH during pregnancy reflects placental physiology during parturition by characterizing placental transcriptomic signatures of maternal plasma CRH and comparing to transcriptomic signatures of gestational age at birth.

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Experiences of complex trauma and adversity, especially for children, are ongoing global crises necessitating adaptation. Bioadaptability to adversity and its health consequences emphasizes the dynamism of adaptation to trauma and the potential for research to inform intervention strategies. Epigenetic variability, particularly DNA methylation, associates with chronic adversity while allowing for resilience and adaptability.

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Background: Traditional and fermented foods are widely consumed by the ethnic population of Northeast India. These foods are not only very nutritious, easily available, and reasonably priced, but also boost immunity and protect from various seasonal infections and have been reported through several investigations. However, pathogens transmitted by these foods have never been reported.

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Early-life adversity increases the risk of health problems. Interventions supporting protective and responsive caregiving offer a promising approach to attenuating adversity-induced changes in stress-sensitive biomarkers. This study tested whether participation in an evidence-based dyadic psychosocial intervention, child-parent psychotherapy (CPP), was related to lower epigenetic age acceleration, a trauma-sensitive biomarker of accelerated biological aging that is associated with later health impairment, in a sample of children with trauma histories.

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  • The Illumina MethylationEPIC BeadChip microarray platform has two versions (v1.0 and v2.0), which show high correlation overall but varying results at the probe level for tools assessing DNA methylation effects.
  • Research using blood samples from different adult age groups found that samples clustered more by the EPIC version used than by other characteristics, indicating significant differences in data outputs between the two versions.
  • The study emphasizes the need to consider which EPIC version is used when analyzing data for meta-analyses and longitudinal studies, as these differences can impact findings in epigenome-wide association studies (EWAS).
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Aging is the process of gradual physio-biochemical deterioration. Although aging is inevitable, healthy aging is the key to individual and communal well-being. Therefore, it is essential to understand the regulation of aging.

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  • The study investigates how sex, genetics, and pesticide exposure impact the risk of sporadic Parkinson's disease (PD), emphasizing that these factors together may influence epigenetic changes associated with PD.
  • Analyzing blood DNA methylation patterns in agricultural workers, the research found significantly more associations in females compared to males, highlighting 69 regions in females versus only 2 in males.
  • The study suggests that genetic factors and their interaction with pesticide exposure play important roles in explaining differences in DNA methylation related to PD, indicating a need for further research with larger populations and better exposure measurements.
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  • Previous research links living in disadvantaged neighborhoods to poor health, potentially affecting inflammation and immune responses through epigenetic changes like DNA methylation (DNAm).
  • The study utilized robust linear regression models to analyze the association between neighborhood deprivation and DNAm in brain tissue from 159 donors, identifying one significant CpG site (cg26514961) linked to neighborhood deprivation.
  • Notably, the study found that the association was more pronounced in individuals with at least one ε4 allele, with some CpG sites showing agreement between brain tissue and easily accessible tissues, suggesting their potential as biomarkers for studying health effects in living individuals.
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Background And Aims: There is limited data on the effects of norepinephrine on neonatal outcomes and maternal complications relative to other vasopressors. The study aimed to compare neonatal outcomes and maternal complications after bolus intravenous doses of phenylephrine and norepinephrine for post-spinal hypotension in elective caesarean section women.

Methods: This randomised study was done on 100 elective caesarean section women under spinal anaesthesia.

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Lasiodiplodia theobromae is a dematiaceous fungus which rarely causes keratitis and is mostly resistant to the commonly used antifungal drugs. Here, we report three cases of keratitis caused by L.theobromae from Assam.

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  • The study investigates how fine particulate matter (PM) may contribute to Alzheimer's disease (AD) through changes in DNA methylation (DNAm) in the brain, focusing on prefrontal cortex tissue from 159 donors.
  • Researchers identified specific CpG sites (cg25433380 and cg10495669) where DNAm differed significantly due to PM exposure, and they found 24 additional sites mediating the relationship between PM and AD-related neuropathological markers.
  • The findings highlight the role of neuroinflammation-related DNAm changes in linking traffic-related PM to Alzheimer's disease, marking this as a pioneering study in understanding how air pollution impacts brain health.
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Neisseria gonorrhoeae (NG), the causative organism of gonorrhea, has been classified by the World Health Organization as 'Priority' two organism owing to its increased resistance to antibiotics and even failure of recommended dual therapy with ceftriaxone and azithromycin. As a result, the general and reproductive health of infected individuals is severely compromised. The imminent public health catastrophe of antimicrobial-resistant gonococci cannot be understated, as t he of severe complications and sequelae of infection are not only increasing but their treatment has also become more expensive.

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Introduction: Growing evidence indicates fine particulate matter (PM) as risk factor for Alzheimer's' disease (AD), but the underlying mechanisms have been insufficiently investigated. We hypothesized differential DNA methylation (DNAm) in brain tissue as potential mediator of this association.

Methods: We assessed genome-wide DNAm (Illumina EPIC BeadChips) in prefrontal cortex tissue and three AD-related neuropathological markers (Braak stage, CERAD, ABC score) for 159 donors, and estimated donors' residential traffic-related PM exposure 1, 3 and 5 years prior to death.

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Unlabelled: Human social epigenomics research is critical to elucidate the intersection of social and genetic influences underlying racial and ethnic differences in health and development. However, this field faces major challenges in both methodology and interpretation with regard to disentangling confounded social and biological aspects of race and ethnicity. To address these challenges, we discuss how these constructs have been approached in the past and how to move forward in studying DNA methylation (DNAm), one of the best-characterized epigenetic marks in humans, in a responsible and appropriately nuanced manner.

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  • SSRIs used to treat prenatal maternal depression may be linked to neurobehavioral issues in newborns, but the exact biological mechanisms behind this connection are unclear.
  • A study analyzed DNA methylation patterns in placentas from 64 cases (20 SSRI-exposed, 44 non-exposed) and found no significant differences in methylation between the two groups under standard thresholds but identified some potential variations at more lenient criteria.
  • The research also included replication efforts with an additional 34 cases but did not confirm the initial findings, suggesting that SSRIs might not significantly affect DNA methylation in the placenta.
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Importance: Very preterm neonates (24-32 weeks' gestation) remain at a higher risk of morbidity and neurodevelopmental adversity throughout their lifespan. Because the extent of prematurity alone does not fully explain the risk of adverse neonatal brain growth or neurodevelopmental outcomes, there is a need for neonatal biomarkers to help estimate these risks in this population.

Objectives: To characterize the pediatric buccal epigenetic (PedBE) clock-a recently developed tool to measure biological aging-among very preterm neonates and to assess its association with the extent of prematurity, neonatal comorbidities, neonatal brain growth, and neurodevelopmental outcomes at 18 months of age.

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SIN3/HDAC is a multi-protein complex that acts as a regulatory unit and functions as a co-repressor/co-activator and a general transcription factor. SIN3 acts as a scaffold in the complex, binding directly to HDAC1/2 and other proteins and plays crucial roles in regulating apoptosis, differentiation, cell proliferation, development, and cell cycle. However, its exact mechanism of action remains elusive.

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Background: Understanding the molecular basis of susceptibility factors to the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection is a global health imperative. It is well-established that males are more likely to acquire SARS-CoV-2 infection and exhibit more severe outcomes. Similarly, exposure to air pollutants and pre-existing respiratory chronic conditions, such as asthma and chronic obstructive respiratory disease (COPD) confer an increased risk to coronavirus disease 2019 (COVID-19).

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  • Sex has been largely ignored in biomedical research, but funding agencies are now pushing for its inclusion to explore how it affects health and disease.
  • Researchers analyzed DNA methylation profiles from a large dataset and found specific genomic regions that show consistent sex differences throughout life, linking these differences to various health conditions.
  • They developed a highly accurate predictor of biological sex based on DNA methylation patterns, revealing important connections between sex chromosomes and autosomal DNA methylation differences.
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Adverse childhood experiences (ACEs), or cumulative childhood stress exposures, such as abuse, neglect, and household dysfunction, predict later health problems in both the exposed individuals and their offspring. One potential explanation suggests exposure to early adversity predicts epigenetic modification, especially DNA methylation (DNAm), linked to later health. Stress experienced preconception by mothers may associate with DNAm in the next generation.

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Attachment is a motivational system promoting felt security to a caregiver resulting in a persistent internal working model of interpersonal behavior. Attachment styles are developed in early social environments and predict future health and development outcomes with potential biological signatures, such as epigenetic modifications like DNA methylation (DNAm). Thus, we hypothesized infant DNAm would associate with toddler attachment styles.

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Background: Human placental DNA methylation (DNAme) data is a valuable resource for studying sex differences during gestation, as DNAme profiles after delivery reflect the cumulative effects of gene expression patterns and exposures across gestation. Here, we present an analysis of sex differences in autosomal DNAme in the uncomplicated term placenta (n = 343) using the Illumina 450K array.

Results: At a false discovery rate < 0.

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The placenta is a crucial organ for supporting a healthy pregnancy, and defective development or function of the placenta is implicated in a number of complications of pregnancy that affect both maternal and fetal health, including maternal preeclampsia, fetal growth restriction, and spontaneous preterm birth. In this review, we highlight the role of the placental genome in mediating fetal and maternal health by discussing the impact of a variety of genetic alterations, from large whole-chromosome aneuploidies to single-nucleotide variants, on placental development and function. We also discuss the placental methylome in relation to its potential applications for refining diagnosis, predicting pathology, and identifying genetic variants with potential functional significance.

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Prepregnancy obesity associates with adverse reproductive outcomes that impact maternal and fetal health. While obesity-driven mechanisms underlying adverse pregnancy outcomes remain unclear, local uterine immune cells are strong but poorly studied candidates. Uterine immune cells, particularly uterine natural killer cells (uNKs), play central roles in orchestrating developmental events in pregnancy.

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