Publications by authors named "Kirmaier C"

The rates, yields, mechanisms and directionality of electron transfer (ET) are explored in twelve pairs of Rhodobacter (R.) sphaeroides and R. capsulatus mutant RCs designed to defeat ET from the excited primary donor (P*) to the A-side cofactors and re-direct ET to the normally inactive mirror-image B-side cofactors.

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The development of chromophores that absorb in the near-infrared (NIR) region beyond 1000 nm underpins numerous applications in medical and energy sciences, yet also presents substantial challenges to molecular design and chemical synthesis. Here, the core bacteriochlorin chromophore of nature's NIR absorbers, bacteriochlorophylls, has been adapted and tailored by annulation in an effort to achieve absorption in the NIR-II region. The resulting bacteriochlorin, Phen2,1-BC, contains two annulated naphthalene groups spanning ,β-positions of the bacteriochlorin and the 1,2-positions of the naphthalene.

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Bacteriochlorophylls, nature's near-infrared absorbers, play an essential role in energy transfer in photosynthetic antennas and reaction centers. To probe energy-transfer processes akin to those in photosynthetic systems, nine synthetic bacteriochlorin-bacteriochlorin dyads have been prepared wherein the constituent pigments are joined at the -positions by a phenylethyne linker. The phenylethyne linker is an unsymmetric auxochrome, which differentially shifts the excited-state energies of the phenyl- or ethynyl-attached bacteriochlorin constituents in the dyad.

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A new pentad array designed to exhibit panchromatic absorption and charge separation has been synthesized and characterized. The array is composed of a triad panchromatic absorber (a bis(perylene-monoimide)-porphyrin) to which are appended an electron acceptor (perylene-diimide) and an electron donor/hole acceptor (bacteriochlorin) in a crossbar arrangement. The motivation for incorporation of the bacteriochlorin a free-base or zinc chlorin utilized in prior constructs was to facilitate hole transfer to this terminal unit and thereby achieve a higher yield of charge separation across the array.

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A panchromatic triad and a charge-separation unit are joined in a crossbar architecture to capture solar energy. The panchromatic-absorber triad (T) is comprised of a central free-base porphyrin that is strongly coupled direct ethyne linkages to two perylene-monoimide (PMI) groups. The charge-separation unit incorporates a free-base or zinc chlorin (C or ZnC) as a hole acceptor (or electron donor) and a perylene-diimide (PDI) as an electron acceptor, both attached to the porphyrin diphenylethyne linkers.

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The primary electron transfer (ET) processes at 295 and 77 K are compared for the reaction center (RC) pigment-protein complex from 13 mutants including a wild-type control. The engineered RCs bear mutations in the L and M polypeptides that largely inhibit ET from the excited state P* of the primary electron donor (P, a bacteriochlorophyll dimer) to the normally photoactive A-side cofactors and enhance ET to the C-symmetry related, and normally photoinactive, B-side cofactors. P* decay is multiexponential at both temperatures and modeled as arising from subpopulations that differ in contributions of two-step ET ( P* → PB → PH), one-step superexchange ET ( P* → PH), and P* → ground state.

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Article Synopsis
  • The study investigates how vibrational-electronic resonances affect energy transfer rates in a series of bacteriochlorin dyads that utilize a consistent phenylethyne linker.
  • By adjusting the excited-state energy gap between the donor and acceptor using chemical modifications, the rates of energy transfer are found to be rapid, ranging from 0.3 to 1.7 picoseconds, aligning closely with predictions made by Förster theory.
  • Despite the potential presence of vibrational-electronic resonances, their effect on energy transfer rates appears minimal, as indicated by the consistent trend and minor deviations from expected values based on the energy gap density.
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Electronic interactions between tetrapyrroles are utilized in natural photosynthetic systems to tune the light-harvesting and energy-/charge-transfer processes in these assemblies. Such interactions also can be employed to tailor the electronic properties of tetrapyrrolic dyads and larger arrays for use in materials science and biomedical research. Here, we have utilized static and time-resolved optical spectroscopy to characterize the optical absorption and emission properties of a set of chlorin and bacteriochlorin dyads with varying degrees of through-bond (TB) and through-space (TS) interactions between the constituent macrocycles.

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We report two-dimensional electronic spectroscopy (2DES) experiments on the bacterial reaction center (BRC) from purple bacteria, revealing hidden vibronic and excitonic structure. Through analysis of the coherent dynamics of the BRC, we identify multiple quasi-resonances between pigment vibrations and excitonic energy gaps, and vibronic coherence transfer processes that are typically neglected in standard models of photosynthetic energy transfer and charge separation. We support our assignment with control experiments on bacteriochlorophyll and simulations of the coherent dynamics using a reduced excitonic model of the BRC.

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Article Synopsis
  • Researchers engineered photosynthetic reaction centers (RCs) by replacing a crucial tyrosine (M210) with noncanonical amino acids, confirming no structural changes in the variants compared to wild type using advanced techniques like mass spectrometry and X-ray crystallography.
  • The study used ultrafast transient absorption spectroscopy to show that the excited electron donor decays into a charge-separated state through two distinct pathways, with the superexchange route's efficiency varying significantly among the engineered variants compared to the wild type.
  • It was found that the choice of tyrosine analog influences the free energy of an intermediate state, with the 3-nitrotyrosine variant causing the most significant energy disruption, further demonstrating the role of M210 in modulating electron
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Article Synopsis
  • Tetrapyrrole macrocycles play important roles in biological systems and have diverse synthetic applications, but comparing their properties can be confusing for both new and experienced researchers.
  • Gouterman's four-orbital model helps explain why the optical spectra of related tetrapyrroles can shift in unexpected ways, contrary to typical chemical expectations.
  • Understanding the differences in oxidation and reduction potentials involves recognizing the unequal effects of structural/electronic changes on the four frontier molecular orbitals, which can guide rational molecular design in tetrapyrrole research.
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Panchromatic absorbers have potential applications in molecular-based energy-conversion schemes. A prior porphyrin-perylene dyad (, where "MI" denotes monoimide) coupled via an ethyne linker exhibits panchromatic absorption (350-700 nm) and a tetrapyrrole-like lowest singlet excited state with a relatively long singlet excited-state lifetime (τ) and increased fluorescence quantum yield (Φ) versus the parent porphyrin. To explore the extension of panchromaticity to longer wavelengths, three arrays have been synthesized: a chlorin-terrylene dyad (), a bacteriochlorin-terrylene dyad (), and a perylene-porphyrin-terrylene triad (), where the terrylene, a π-extended homologue of perylene, is attached via an ethyne linker.

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Article Synopsis
  • All natural amino acids were tested for substitution at position L185 near the B-side bacteriopheophytin in bacterial reaction centers, resulting in various modifications.
  • Approximately 50% of the reaction centers with Glu at L185 incorporated a magnesium chlorin with unique properties rather than the typical BChl oxidation product, leading to the formation of a charge-separated state in some cases.
  • Different amino acid substitutions yielded varying amounts of bacteriochlorophyll (BChl) in the reaction centers, revealing new insights into how amino acids can influence pigment types in photosynthetic proteins.
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  • * One structure shows a 14-subunit LH1 ring that is open due to the presence of protein-W, while the other features a closed 16-subunit LH1 ring without the protein.
  • * The findings reveal important details about how quinones interact with the RC-LH1 complex, including a new conformational change when quinones bind and the role of protein-W in facilitating faster quinone exchange by preventing the LH1 ring from closing.
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  • Six zinc(II) porphyrins with varying numbers of -phenyl substituents were analyzed to understand how these groups affect their electronic and photophysical properties.
  • Spectroscopic data and theoretical calculations indicate that adding phenyl groups raises the energy of the highest occupied molecular orbital, leading to changes in absorption wavelengths and intensities.
  • Findings show increased fluorescence yields, changes in intersystem crossing, and unique photophysical behaviors in zinc porphyrins compared to their free base counterparts, providing valuable insights for applications in solar energy and life sciences.
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We report 90% yield of electron transfer (ET) from the singlet excited state P* of the primary electron-donor P (a bacteriochlorophyll dimer) to the B-side bacteriopheophytin (H) in the bacterial photosynthetic reaction center (RC). Starting from a platform RC bearing several amino acid changes, an Arg in place of the native Leu at L185-positioned over one face of H and only ∼4 Å from the 4 central nitrogens of the H macrocycle-is the key additional mutation providing 90% yield of PH This all but matches the near-unity yield of A-side PH charge separation in the native RC. The 90% yield of ET to H derives from (minimally) 3 P* populations with distinct means of P* decay.

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In bacterial reaction centers (RCs), photon-induced initial charge separation uses an A-side bacteriochlorophyll (BChl, B) and bacteriopheophytin (BPh, H), while the near-mirror image B-side B and H cofactors are inactive. Two new sets of Rhodobacter capsulatus RC mutants were designed, both bearing substitution of all amino acids for the native histidine M180 (M-polypeptide residue 180) ligand to the core Mg ion of B. Residues are identified that largely result in retention of a BChl in the B site (Asp, Ser, Pro, Gln, Asn, Gly, Cys, Lys, and Thr), ones that largely harbor the Mg-free BPh in the B site (Leu and Ile), and ones for which isolated RCs are comprised of a substantial mixture of these two RC types (Ala, Glu, Val, Met and, in one set, Arg).

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Article Synopsis
  • The light-harvesting complex LH2 in Rhodobacter sphaeroides optimizes growth by efficiently harvesting light across varying intensities.
  • Researchers replaced native pigments in LH2 to enhance its light absorption spectrum, finding that specific amino acids were key to binding these pigments.
  • Modified LH2 complexes showed effective energy transfer and promise for improving light-harvesting capabilities through engineered pigment pathways.
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Panchromatic absorbers that have robust photophysical properties enable new designs for molecular-based light-harvesting systems. Herein, we report experimental and theoretical studies of the spectral, redox, and excited-state properties of a series of perylene-monoimide-ethyne-porphyrin arrays wherein the number of perylene-monoimide units is stepped from one to four. In the arrays, a profound shift of absorption intensity from the strong violet-blue (B and B ) bands of typical porphyrins into the green, red, and near-infrared (Q and Q ) regions stems from mixing of chromophore and tetrapyrrole molecular orbitals (MOs), which gives multiplets of MOs having electron density spread over the entire array.

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The bacterial reaction center (BRC) serves as an important model system for understanding the charge separation processes in photosynthesis. Knowledge of the electronic structure of the BRC is critical for understanding its charge separation mechanism. While it is well-accepted that the "special pair" pigments are strongly coupled, the degree of coupling among other BRC pigments has been thought to be relatively weak.

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Fluorescence-detected two-dimensional electronic spectroscopy (F-2DES) projects the third-order non-linear polarization in a system as an excited electronic state population which is incoherently detected as fluorescence. Multiple variants of F-2DES have been developed. Here, we report phase-modulated F-2DES measurements on a strongly coupled symmetric bacteriochlorin dyad, a relevant 'toy' model for photosynthetic energy and charge transfer.

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Achieving solar light harvesting followed by efficient charge separation and transport is an essential objective of molecular-based artificial photosynthesis. Architectures that afford strong absorption across the near-UV to near-infrared region, namely panchromatic absorptivity, are critically important given the broad spectral distribution of sunlight. A tetrapyrrole-perylene pentad array was synthesized and investigated as a means to integrate panchromatic light harvesting and intramolecular charge separation.

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In the initial steps of photosynthesis, reaction centers convert solar energy to stable charge-separated states with near-unity quantum efficiency. The reaction center from purple bacteria remains an important model system for probing the structure-function relationship and understanding mechanisms of photosynthetic charge separation. Here we perform 2D electronic spectroscopy (2DES) on bacterial reaction centers (BRCs) from two mutants of the purple bacterium , spanning the Q absorption bands of the BRC.

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Seemingly redundant parallel pathways for electron transfer (ET), composed of identical sets of cofactors, are a cornerstone feature of photosynthetic reaction centers (RCs) involved in light-energy conversion. In native bacterial RCs, both A and B branches house one bacteriochlorophyll (BChl) and one bacteriopheophytin (BPh), but the A branch is used exclusively. Described herein are the results obtained for two Rhodobacter capsulatus RCs with an unnaturally high degree of cofactor asymmetry, two BPh on the RC's B side and two BChl on the A side.

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Photosynthesis uses a limited range of the solar spectrum, so enhancing spectral coverage could improve the efficiency of light capture. Here, we show that a hybrid reaction centre (RC)/yellow fluorescent protein (YFP) complex accelerates photosynthetic growth in the bacterium Rhodobacter sphaeroides. The structure of the RC/YFP-light-harvesting 1 (LH1) complex shows the position of YFP attachment to the RC-H subunit, on the cytoplasmic side of the RC complex.

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