Publications by authors named "Ki Moo Lim"

Article Synopsis
  • - The CiPA initiative is working to better predict the risk of torsades de pointes (TdP) related to drug use by using computational models and explainable artificial intelligence (XAI) to analyze in-silico biomarkers and their impact on drug toxicity.
  • - The study created a dataset of 28 drugs and computed twelve in-silico biomarkers, training several machine learning models (like ANN and SVM) to predict toxicity risks, finding that the ANN model performed the best overall in classification accuracy.
  • - Using the SHAP method, the researchers were able to identify which biomarkers significantly contributed to the toxicity predictions, but they noted that biomarker selection didn't always enhance model performance, emphasizing the need to evaluate multiple classifiers
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Article Synopsis
  • - This study focuses on improving the assessment of drug-induced torsades de pointes (TdP) risk, which is crucial for drug development due to potential arrhythmias and sudden cardiac death.
  • - It introduces a stacking ensemble machine learning model that combines various biomarkers and hERG dynamics, achieving high accuracy in predicting risk levels associated with TdP.
  • - The research also looks into the variability among individuals by using data from different human ventricular cell models and identifies critical ion channels that significantly impact TdP risk prediction.
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This study proposes a small one-dimensional convolutional neural network (1D-CNN) framework for individual authentication, considering the hypothesis that a single heartbeat as input is sufficient to create a robust system. A short segment between R to R of electrocardiogram (ECG) signals was chosen to generate single heartbeat samples by enforcing a rigid length thresholding procedure combined with an interpolation technique. Additionally, we explored the benefits of the synthetic minority oversampling technique (SMOTE) to tackle the imbalance in sample distribution among individuals.

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Continuous blood pressure (BP) monitoring is essential for managing cardiovascular disease. However, existing devices often require expert handling, highlighting the need for alternative methods to simplify the process. Researchers have developed various methods using physiological signals to address this issue.

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Safety pharmacology examines the potential for new drugs to have unusual, rare side effects such as torsade de pointes (TdP). Recently, as a part of the Comprehensive in vitro Proarrhythmia Assay (CiPA) project, techniques for predicting the development of drug-induced TdP through computer simulations have been proposed and verified. However, CiPA assessment generally does not consider the effect of cardiac cell inter-individual variability, especially related to metabolic status.

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Torsades de pointes (TdP) is a type of ventricular arrhythmia that can lead to sudden cardiac death. Drug-induced TdP has been an important concern for researchers and international regulatory boards. The Comprehensive Proarrhythmia Assay (CiPA) initiative was proposed that integrates testing and computational models of cardiac ion channels and human cardiomyocyte cells to evaluate the proarrhythmic risk of drugs.

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Predicting ventricular arrhythmia Torsade de Pointes (TdP) caused by drug-induced cardiotoxicity is essential in drug development. Several studies used single biomarkers such as qNet and Repolarization Abnormality (RA) in a single cardiac cell model to evaluate TdP risk. However, a single biomarker may not encompass the full range of factors contributing to TdP risk, leading to divergent TdP risk prediction outcomes, mainly when evaluated using unseen data.

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Due to the outbreak of the SARS-CoV-2 virus, drug repurposing and Emergency Use Authorization have been proposed to treat the coronavirus disease 2019 (COVID-19) during the pandemic. While the efficiency of the drugs has been discussed, it was identified that certain compounds, such as chloroquine and hydroxychloroquine, cause QT interval prolongation and potential cardiotoxic effects. Drug-induced cardiotoxicity and QT prolongation may lead to life-threatening arrhythmias such as torsades de pointes (TdP), a potentially fatal arrhythmic symptom.

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Researchers commonly use continuous noninvasive blood-pressure measurement (cNIBP) based on photoplethysmography (PPG) signals to monitor blood pressure conveniently. However, the performance of the system still needs to be improved. Accuracy and precision in blood-pressure measurements are critical factors in diagnosing and managing patients' health conditions.

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This study proposes a convolutional neural network (CNN) model using action potential (AP) shapes as input for proarrhythmic risk assessment, considering the hypothesis that machine-learning features automatically extracted from AP shapes contain more meaningful information than do manually extracted indicators. We used 28 drugs listed in the comprehensive in vitro proarrhythmia assay (CiPA), consisting of eight high-risk, eleven intermediate-risk, and nine low-risk torsadogenic drugs. We performed drug simulations to generate AP shapes using experimental drug data, obtaining 2000 AP shapes per drug.

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Researchers have recently proposed the Comprehensive In-vitro Proarrhythmia Assay (CiPA) to analyze medicines' TdP risks. Using the TdP metric known as qNet, numerous single-drug effects have been studied to classify the medications as low, intermediate, and high-risk. Furthermore, multiple medication therapies are recognized as a potential method for curing patients, mainly when limited drugs are available.

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Heart-sound auscultation is one of the most widely used approaches for detecting cardiovascular disorders. Diagnosing abnormalities of heart sound using a stethoscope depends on the physician's skill and judgment. Several studies have shown promising results in automatically detecting cardiovascular disorders based on heart-sound signals.

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Many researchers have suggested evaluation methods and Torsades de Pointes (TdP) metrics to assess the proarrhythmic risk of a drug based on the simulation, as part of the Comprehensive Proarrhythmia Assay (CiPA) project. In the previous study, we validated the robustness of 12 features using the ordinal logistic regression (OLR) model by comparing the classification performances of metrics according to the experimental datasets used; however, the OLR model using 12 features did not provide desirable results. This study proposed a convolutional neural network (CNN) model using the variability of promising TdP metrics hypothesizing that the variability of features based on beats has more information than the single value of features.

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Hypertension is a severe public health issue worldwide that significantly increases the risk of cardiac vascular disease, stroke, brain hemorrhage, and renal dysfunction. Early screening of blood pressure (BP) levels is essential to prevent the dangerous complication associated with hypertension as the leading cause of death. Recent studies have focused on employing photoplethysmograms (PPG) with machine learning to classify BP levels.

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Action potential duration (APD) alternans, an alternating phenomenon between action potentials in cardiomyocytes, causes heart arrhythmia when the heart rate is high. However, some of the APD alternans observed in clinical trials occurs under slow heart rate conditions of 100 to 120 bpm, increasing the likelihood of heart arrhythmias such as atrial fibrillation. Advanced studies have identified the occurrence of this type of APD alternans in terms of electrophysiological ion channel currents in cells.

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The SCN5A mutations have been long associated with long QT variant 3 (LQT3). Recent experimental and computation studies have reported that mexiletine effectively treats LQT3 patients associated with the A1656D mutation. However, they have primarily focused on cellular level evaluations and have only looked at the effects of mexiletine on action potential duration (APD) or QT interval reduction.

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Since the Comprehensive Proarrhythmia Assay (CiPA) initiation, many studies have suggested various features based on ionic charges, action potentials (AP), or intracellular calcium (Ca) to assess proarrhythmic risk. These features are computed through electrophysiological simulations using experimental datasets as input, therefore changing with the quality of experimental data; however, research to validate the robustness of features for proarrhythmic risk assessment of drugs depending on datasets has not been conducted. This study aims to verify the availability of features commonly used in assessing the cardiac toxicity of drugs through an ordinal logistic regression model and three datasets measured under different experimental environments and with different purposes.

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Comprehensive in vitro Proarrhythmia Assay (CiPA) projects for assessing proarrhythmic drugs suggested a logistic regression model using qNet as the Torsades de Pointes (TdP) risk assessment biomarker, obtained from in silico simulation. However, using a single in silico feature, such as qNet, cannot reflect whole characteristics related to TdP in the entire action potential (AP) shape. Thus, this study proposed a deep convolutional neural network (CNN) model using differential action potential shapes to classify three proarrhythmic risk levels: high, intermediate, and low, considering both characteristics related to TdP not only in the depolarization phase but also the repolarization phase of AP shape.

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While previous studies have demonstrated the feasibility of using ear-electroencephalography (ear-EEG) for the development of brain-computer interfaces (BCIs), most of them have been performed using exogenous paradigms in offline environments. To verify the reliable feasibility of constructing ear-EEG-based BCIs, the feasibility of using ear-EEG should be further demonstrated using another BCI paradigm, namely the endogenous paradigm, in real-time online environments. Exogenous and endogenous BCIs are to use the EEG evoked by external stimuli and induced by self-modulation, respectively.

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Cardiovascular disorders, including atrial fibrillation (AF) and congestive heart failure (CHF), are the significant causes of mortality worldwide. The diagnosis of cardiovascular disorders is heavily reliant on ECG signals. Therefore, extracting significant features from ECG signals is the most challenging aspect of representing each condition of ECG signal.

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As part of the Comprehensive Proarrhythmia Assay initiative, methodologies for predicting the occurrence of drug-induced torsade de pointes computer simulations have been developed and verified recently. However, their predictive performance still requires improvement. Herein, we propose an artificial neural networks (ANN) model that uses nine multiple input features, considering the action potential morphology, calcium transient morphology, and charge features to further improve the performance of drug toxicity evaluation.

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Electrocardiograms (ECGs) are widely used for diagnosing cardiac arrhythmia based on the deformation of signal shapes due to changes in various heart diseases. However, these abnormal signs may not be observed in some 12 ECG channels, depending on the location, the heart shape, and the type of cardiac arrhythmia. Therefore, it is necessary to closely and comprehensively observe ECG records acquired from 12 channel electrodes to diagnose cardiac arrhythmias accurately.

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It is well known that cardiac electromechanical delay (EMD) can cause dyssynchronous heart failure (DHF), a prominent cardiovascular disease (CVD). This work computationally assesses the conductance variation of every ion channel on the cardiac cell to give rise to EMD prolongation. The electrical and mechanical models of human ventricular tissue were simulated, using a population approach with four conductance reductions for each ion channel.

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The pulse arrival time (PAT), the difference between the R-peak time of electrocardiogram (ECG) signal and the systolic peak of photoplethysmography (PPG) signal, is an indicator that enables noninvasive and continuous blood pressure estimation. However, it is difficult to accurately measure PAT from ECG and PPG signals because they have inconsistent shapes owing to patient-specific physical characteristics, pathological conditions, and movements. Accordingly, complex preprocessing is required to estimate blood pressure based on PAT.

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Myocardial fibrosis is an integral component of most forms of heart failure. Clinical and computational studies have reported that spatial fibrosis pattern and fibrosis amount play a significant role in ventricular arrhythmogenicity. This study investigated the effect of the spatial distribution of fibrosis and fibrosis amount on the electrophysiology and mechanical performance of the human ventricles.

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