Publications by authors named "Khiutti A"

Tomato stem endophyte Bacillus safensis TS3 was isolated from surface-sterilized stems of greenhouse tomato plants. Here, we sequenced the complete genome of this strain to understand the molecular mechanisms underlying its beneficial activities.

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Potato spindle tuber viroid (PSTVd) is a naked, circular, single-stranded RNA (356-363 nucleotides in length) which lacks any protein-coding sequences. It is an economically important pathogen and is classified as a high-risk plant quarantine disease. Moreover, it is known that PSTVd is mechanically transmitted by vegetative plant propagation through infected pollen, and by aphids.

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Potato viral disease has been a major problem in potato production worldwide including Russia. Here, we detected Potato Virus M (PVM), P (PVP), S (PVS), Y (PVY), and X (PVX) and Potato Leaf Roll Virus (PLRV) by RT-PCR on potato leaves and tubers from the Northwestern (NW), Volga (VF), and Far Eastern (FE) federal districts of Russia. Each sample was co-infected with up to five viruses.

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The review considers quarantine species and nematode pathotypes potentially dangerous for domestic potato production. Potatoes are affected by more than 30 types of parasitic nematodes, but the review focuses on the most harmful representatives of genera that cause great damage to potato production: Globodera, Ditylenchus, Nacobbus and Meloidogyne. Phytopathological and molecular methods of identification of species and pathotypes and the main achievements in studying the population variability of parasitic potato nematodes were analyzed.

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The active expansion of foreign potato cultivars on the territory of the Russian Federation has led to a change in the dominant pathogen species and to the emergence of new pathotypes of causal agents of harmful potato diseases. The aim of the study was to evaluate resistance to Phytophthora infestans and Globodera rostochiensis of modern potato cultivars and determine the distribution of fungal and oomycetic diseases on potato cultivars in various agroclimatic zones of Russia. The resistance of 41 foreign cultivars was evaluated to pathotype Ro1 G.

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Article Synopsis
  • Globodera rostochiensis is a significant potato pathogen that interacts with host plant roots, with commercial varieties relying on specific resistance genes (R genes) from wild relatives and Andean native potatoes.
  • Research on South American Solanum phureja accessions shows that resistant genotypes trigger an active stress response, including gene activation, tissue regeneration, and hypersensitive responses when attacked by G. rostochiensis.
  • The study highlights the importance of analyzing gene expression changes in S. phureja to understand resistance mechanisms and suggests that de novo transcriptome assembly can identify new resistance traits.
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Contigs with sequence similarity to potato virus P (PVP), which belongs to the genus Carlavirus, were identified by high-throughput sequencing analysis in potato tubers collected from a farmer's potato production field in Surazhevka, Artyom, Primorskiy Krai (Russia) in 2018. The complete genome sequence of this virus consisted of 8,394 nucleotides, excluding the poly(A) tail. This is the first report of PVP being detected outside South America.

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Article Synopsis
  • * A study comparing the root transcriptomes of potato genotypes revealed differentially expressed genes related to resistance against a specific nematode, but limited annotations made it difficult to compile a clear list of candidate R genes.
  • * Integrating transcriptomic analysis with data on certain potato genes improved candidate gene identification, suggesting that this combined approach could expedite the discovery of potato R genes for further research and breeding efforts.
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Potato late blight, caused by the oomycete phytopathogen Phytophthora infestans, is a devastating disease found in potato-growing regions worldwide. Long-term management strategies to control late blight include the incorporation of host resistance to predominant strains. However, due to rapid genetic changes within pathogen populations, rapid and recurring identification and integration of novel host resistance traits is necessary.

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