Publications by authors named "Khiry Patterson"

Multiplexing enables the monitoring of hundreds to thousands of proteins in quantitative proteomics analyses and increases sample throughput. In most mass-spectrometry-based proteomics workflows, multiplexing is achieved by labeling biological samples with heavy isotopes via precursor isotopic labeling or isobaric tagging. Enhanced multiplexing strategies, such as combined precursor isotopic labeling and isobaric tagging (cPILOT), combine multiple technologies to afford an even higher sample throughput.

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Article Synopsis
  • - Proteomics research has evolved significantly due to advancements in high-throughput LC-MS/MS technology and automated workflows, enabling the analysis of large sample sizes but necessitating effective quality control (QC) measures for reliable results.
  • - A study analyzed 335 patient plasma samples using TMT 16-plex methods over 10 months, with 271 pooled QC results generated from a representative plasma sample to monitor instrument performance and normalize data across batches.
  • - Key metrics were assessed to develop a robust LC-MS/MS QC workflow, providing guidelines for ongoing QC checks and real-time troubleshooting to optimize instrument performance and enhance data reliability in future studies.
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The vascular endothelial growth factor (VEGF) family of genes has been implicated in the clinical development of Alzheimer's Disease (AD). A previous study identified associations between gene expression of VEGF family members in the prefrontal cortex and cognitive performance and AD pathology. This study explored if those associations were also observed in the blood.

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Rationale: Experiments were performed to probe the creation of apparent even-electron, [M-H](+) ions by CID of Ag-cationized peptides with N-terminal imine groups (Schiff bases).

Methods: Imine-modified peptides were prepared using condensation reactions with aldehydes. Ag(+) -cationized precursors were generated by electrospray ionization (ESI).

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