Publications by authors named "Keith Ligon"

Purpose: Adavosertib is an oral small molecular inhibitor of Wee1. The Adult Brain Tumor Consortium performed a phase I study of adavosertib, radiation (RT) and temozolomide (TMZ) in newly diagnosed glioblastoma (GBM) as well as a surgical window of opportunity study in recurrent GBM.

Patients And Methods: The maximum tolerated dose (MTD) of adavosertib was determined in adult patients with newly diagnosed GBM using a standard 3+3 design in 2 separate cohorts: with concurrent RT/TMZ or with adjuvant TMZ.

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Low-grade gliomas and reactive piloid gliosis can present with overlapping features on conventional histology. Given the large implications for patient treatment, there is a need for effective methods to discriminate these morphologically similar but clinically distinct entities. Using routinely available stains, we hypothesize that a limited panel including SOX10, p16, and cyclin D1 may be useful in differentiating mitogen-activated protein (MAP) kinase-activated low-grade gliomas from piloid gliosis.

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Purpose: Melanoma brain metastases (MBMs) are a common, lethal complication of metastatic melanoma. Despite improvements in treatments, subsets of MBM patients experience rapid decline, and few prognostic biomarkers have been identified. An improved understanding of the molecular features specifically associated with MBM overall survival (OS) and intracranial progression free survival (PFS) could facilitate the development of more effective clinical management strategies.

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  • Glioblastoma is described as immunologically "cold," making it resistant to solo immune-checkpoint inhibitors (ICI) like pembrolizumab, although neoadjuvant use may improve survival based on prior studies.
  • A study involving 25 additional patients analyzed tumor tissue for gene signatures and found that neoadjuvant pembrolizumab led to decreased cancer proliferation genes and increased T-cell activity, indicating a specific response to this treatment.
  • Despite observing these molecular changes, the study did not confirm an overall survival benefit from neoadjuvant pembrolizumab, suggesting that some patients may inherently resist ICI and may need additional therapies for effective treatment.
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Background: Glioblastoma (GBM) has a median survival of <2 years. Pexidartinib (PLX3397) is a small-molecule inhibitor of CSF1R, KIT, and oncogenic FTL3, which are implicated in GBM treatment resistance. Results from glioma models indicate that combining radiation therapy (RT) and pexidartinib reduces radiation resistance.

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  • Molecular features, particularly CDKN2A/B loss, impact survival outcomes in IDH1/2-mutant astrocytomas, with grade 2/3 tumors showing varied survival based on molecular characteristics.
  • In a study of 998 patients, those with intact CDKN2A/B and no focal amplifications had the longest survival, while variations in CDKN2A/B status correlated with poorer outcomes, particularly in grade 4 tumors.
  • The research highlights the potential for improved prognostic predictions in IDHmut-astrocytomas by integrating molecular data with histological grading, revealing distinct profiles linked to survival outcomes.
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Purpose: Radiotherapy may enhance antitumor immune responses by several mechanisms, including induction of immunogenic cell death. We performed a phase 2 study of pembrolizumab with re-irradiation in patients with recurrent glioblastoma.

Patients And Methods: Sixty patients with recurrent glioblastoma received pembrolizumab with re-irradiation alone (cohort A, bevacizumab-naïve; n = 30) or with bevacizumab continuation (cohort B, n = 30).

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  • The study explored the effect of perampanel, an AMPA receptor antagonist, on reducing hyperexcitability around gliomas, which could promote tumor growth.
  • An open-label trial compared perampanel with standard care in patients with high-grade glioma undergoing surgery, measuring outcomes like high-frequency oscillation rates and seizure occurrence.
  • Results showed no significant difference in hyperexcitability outcomes between perampanel and standard care, and early termination of the trial indicated similar seizure rates and overall survival for both treatments.
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  • Diffuse hemispheric gliomas, specifically H3G34R/V-mutant, are aggressive brain tumors with no current targeted therapies and come from neural precursor cells.
  • Researchers found that these tumors display developmental patterns similar to healthy brain interneurons and identified key genes that these tumor cells depend on, especially CDK6.
  • Targeting CDK6 with inhibitors showed promising results in reducing tumor growth and improving survival in experimental models, with one patient showing a significant response to treatment.
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  • - Histopathology image evaluation is crucial for cancer diagnosis, but traditional AI methods struggle with generalizing across different imaging protocols and sample populations due to their specialized nature.
  • - The Clinical Histopathology Imaging Evaluation Foundation (CHIEF) model is introduced as a general-purpose, weakly supervised machine learning framework designed to systematically evaluate cancer by extracting diverse imaging features through two complementary pretraining methods.
  • - CHIEF, trained on over 60,000 whole-slide images from various sites, demonstrated improved performance over existing deep learning approaches by up to 36.1%, showing its effectiveness in adapting to diverse samples and enhancing digital pathology evaluations for cancer patients.
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Background: Postoperative recurrence risk for pediatric low-grade gliomas (pLGGs) is challenging to predict by conventional clinical, radiographic, and genomic factors. We investigated if deep learning (DL) of magnetic resonance imaging (MRI) tumor features could improve postoperative pLGG risk stratification.

Methods: We used a pretrained DL tool designed for pLGG segmentation to extract pLGG imaging features from preoperative T2-weighted MRI from patients who underwent surgery (DL-MRI features).

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Unlabelled: We investigated the effectiveness of navtemadlin (KRT-232) in treating recurrent glioblastoma. A surgical window-of-opportunity trial ( NCT03107780 ) was conducted on 21 patients to determine achievable drug concentrations within tumor tissue and examine mechanisms of response and resistance. Both 120 mg and 240 mg daily dosing achieved a pharmacodynamic impact.

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Background: Velcrins are molecular glues that kill cells by inducing the formation of a protein complex between the RNase SLFN12 and the phosphodiesterase PDE3A. Formation of the complex activates SLFN12, which cleaves tRNA(TAA) and induces apoptosis. Velcrins such as the clinical investigational compound, BAY 2666605, were found to have activity across multiple solid tumor cell lines from the cancer cell line encyclopedia, including glioblastoma cell lines.

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  • A study examined how molecular features, clinical metrics, and treatment affect the overall survival of glioma patients amidst recent changes in classification and care standards.
  • The research involved analyzing 4,400 gliomas from various sources, finding that 27.2% had updated molecular classifications that differed from their initial diagnoses; survival rates varied significantly between different patient groups.
  • The study identified key prognostic factors for different glioma types and created survival prediction tools based on age, molecular features, and treatment, aiming to enhance understanding and research on gliomas.
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  • The study investigated differences in IDH-mutant gliomas across different age groups (pediatric, young adult, and older adult) to better understand their clinical and genomic characteristics.
  • Young adult patients experienced shorter progression-free survival (PFS) and time to malignant transformation compared to pediatric and older adult patients, but their overall survival (OS) rates were similar.
  • The results suggest that treatment strategies and outcomes for glioma patients should be tailored based on age, indicating a need for further investigation into age-related factors affecting these tumors.
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  • A study conducted at Dana-Farber/Boston Children's Cancer and Blood Disorders Center focused on classifying pediatric solid tumor diagnoses and analyzing genomic mutations to improve clinical trial design and treatment options.
  • Over 6.5 years, the research included 888 pediatric cancer patients, revealing that 33% had genomic variants that aligned with precision oncology trials, while 14% received targeted therapies.
  • The findings stress the significance of using genomic data for enhancing treatment strategies and the necessity for data sharing, particularly for addressing rare pediatric cancers in clinical settings.
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Cell density, the ratio of cell mass to volume, is an indicator of molecular crowding and therefore a fundamental determinant of cell state and function. However, existing density measurements lack the precision or throughput to quantify subtle differences in cell states, particularly in primary samples. Here we present an approach for measuring the density of 30,000 single cells per hour with a precision of 0.

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Over-activation of the epidermal growth factor receptor (EGFR) is a hallmark of glioblastoma. However, EGFR-targeted therapies have led to minimal clinical response. While delivery of EGFR inhibitors (EGFRis) to the brain constitutes a major challenge, how additional drug-specific features alter efficacy remains poorly understood.

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  • The study investigated the effects of the AMPA receptor antagonist perampanel on hyperexcitability and clinical outcomes in patients undergoing surgery for high-grade glioma.
  • The trial compared perampanel to standard care using levetiracetam, measuring intraoperative hyperexcitability through high-frequency oscillation (HFO) rates and tracking seizure-free outcomes and overall survival.
  • Results indicated no significant difference in hyperexcitability or survival outcomes between the two treatments, leading to the early termination of the trial due to futility, while perampanel was found to be safe and well-tolerated.
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Wilms tumor (WT) is the most common renal malignancy of childhood. Despite improvements in the overall survival, relapse occurs in ~15% of patients with favorable histology WT (FHWT). Half of these patients will succumb to their disease.

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  • * Researchers used advanced RNA-sequencing techniques on tumor samples taken from patients after four weeks of IDHi treatment to examine cellular changes.
  • * Findings reveal that IDHi promotes differentiation of tumor cells toward a specific brain cell type (astrocytes), reduces stem-like cells, and highlights a mutation (NOTCH1) that may hinder this differentiation and affect treatment response.
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Purpose To develop and externally test a scan-to-prediction deep learning pipeline for noninvasive, MRI-based mutational status classification for pediatric low-grade glioma. Materials and Methods This retrospective study included two pediatric low-grade glioma datasets with linked genomic and diagnostic T2-weighted MRI data of patients: Dana-Farber/Boston Children's Hospital (development dataset, = 214 [113 (52.8%) male; 104 (48.

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Purpose: Adverse clinical events cause significant morbidity in patients with GBM (GBM). We examined whether genomic alterations were associated with AE (AE) in patients with GBM.

Experimental Design: We identified adults with histologically confirmed IDH-wild-type GBM with targeted next-generation sequencing (OncoPanel) at Dana Farber Cancer Institute from 2013 to 2019.

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