Draft Genome Sequences of the Lipid-Degrading Bacteria sp. Strains F1 and F3, Isolated from Mesopelagic Seawater from the Sagami Trough, in Japan.

sp. strains F1 and F3 are lipid-degrading bacteria that were isolated from intermediate water from the Sagami Trough, in Japan. We present the draft genome sequences of these two strains, which have 4,983,334 bp and 4,967,310 bp, respectively.