Publications by authors named "Kazem Baesi"

Background: Since the beginning of the SARS-CoV-2 pandemic, there have been mutations caused by new SARS-CoV-2 variants, such as Alpha, Beta, Gamma, Delta, and Omicron, recognized as the variants of concern (VOC) worldwide. These variants can affect vaccine efficacy, disease control, and treatment effectiveness. The present study aimed to evaluate the levels of total and neutralizing antibodies produced by PastoCoAd vaccine candidates against the VOC strains at different time points.

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Background: We aimed to investigate miR-21-5p inhibition effect on lncRNA-XIST expression and apoptosis status of MCF-7 cells.

Methods: The MCF-7 cells were cultured and transfected by the anti-miR-21-5p oligonucleotide and expression of miR-21-5p, lncRNA-XIST, apoptosis-associated genes ( and ) and one miR-21-5p-unrelated lncRNA (BC200) was assessed by RT-qPCR. Furthermore, cell viability checked by MTT assay and apoptosis and cell cycle in transfected cells were detected by flow cytometry.

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The use of a combination of three-drug regimen has improved HIV-1 infected patients' life span and quality; however the emergence of drug-resistant strains remains a main problem. Reverse transcriptase inhibitors (RTIs) consist of a main part of highly active anti-retroviral therapy (HAART) regimen. The present study aimed to investigate resistant mutations to RTI drugs in both treatment naïve and under treatment HIV patients in Mashhad city, north-eastern Iran.

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Article Synopsis
  • The study investigated the use of engineered outer membrane vesicles (OMVs) from ClearColi™ as both an adjuvant and a carrier for a novel vaccine targeting HIV-1 antigens Nef and Nef-Tat.
  • Researchers isolated recombinant OMVs (rOMVs) containing specific fusion proteins and confirmed their presence through western blotting.
  • Results showed that rOMVs induced stronger immune responses, including higher levels of IgG2a and IFN-γ, compared to traditional adjuvants, indicating their potential as effective vaccine carriers against HIV-1.
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Aim: The potency of Adenovector expressing Mda7-tLyp1 (Ad-Mda7-tLyp1) for death induction was evaluated on the breast (MCF7), liver (HepG2), and gastric (MKN45) cancer cell lines.

Background: Mda-7 could be a possible complementary to traditional cancer therapy, and tethering to tumor-homing peptides (THPs) might improve its therapeutic efficacy.

Methods: After the preparation of recombinant Ad-Mda7-tLyp1 and Ad-Mda7, the expression of recombinant proteins was analyzed by ELISA.

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Background: Heterologous combinations in vaccine design are an effective approach to promote T cell activity and antiviral effects. The goal of this study was to compare the homologous and heterologous regimens targeting the Nef-Tat fusion antigen to develop a human immunodeficiency virus-1 (HIV-1) therapeutic vaccine candidate.

Methods: At first, the DNA and protein constructs harboring HIV-1 Nef and the first exon of Tat as linked form (pcDNA- and Nef-Tat protein) were prepared in large scale and high purity.

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Multiple myeloma is a type of malignant neoplasia whose treatment has changed over the past decade. This study aimed to investigate the effects of combination of Adenovector-carrying interleukin-24 and herpes simplex virus 1 thymidine kinase/ganciclovir on tumor growth, autophagy, and unfolded protein response mechanisms in mouse model of multiple myeloma. Six groups of mice, including Ad-HSV-tk/GCV, Ad-IL-24, Ad-HSV-tk/IL-24, Ad-GFP, and positive and negative controls, were investigated, and each group was injected every 72 h.

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Background: Melanoma differentiation-associated gene 7 (Mda-7) encodes IL-24, which can induce apoptosis in cancer cells. A novel gene therapy approach to treat deadly brain tumors, recombinant mda-7 adenovirus (Ad/mda-7) efficiently kills glioma cells. In this study, we investigated the factors affecting cell survival and apoptosis and autophagy mechanisms that destroy glioma cells by Ad/IL-24.

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The endoplasmic reticulum (ER) response mechanism to cellular stress is mediated by the unfolded protein response/ER-associated degradation (UPR/ERAD) pathway. A viral infection can trigger ER stress and engage some transcription factors, depending on the host cell and virus type, activating or inhibiting autophagy. The relationship between ER response and autophagy in rabies has not been investigated yet.

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For adenoviruses (Ads) to be optimally effective in cancer theranostics, they need to be retargeted toward target cells and lose their natural tropism. Typically, this is accomplished by either engineering fiber proteins and/or employing bispecific adapters, capable of bonding Ad fibers and tumor antigen receptors. This study aimed to present a simple and versatile method for generating Ad-based bionanoparticles specific to target cells, using the SpyTag-SpyCatcher system.

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Background: One of the problems with treating HIV-infected patients with ARVs is that the treatment can reduce viral load and does not increase the number of CD4 cells (immunological discordance). There are still challenges to treating HIV-positive patients.

Aim: This study aimed to investigate the expression level of 18 miRNAs involved in the proliferation and differentiation of CD4 T cells in a target (discordant immune response) and a control (immune response) group.

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Background: Background: In spite of many reports on persistent low CD4 T cell counts and change in immune-related gene expression level in patients with HIV infection, there is still uncertainty about significant association between gene expression level and HIV infection in patients with and without discordant immune response (DIR). The aim of this study was to compare the expression level of CD4, CCL5, IFN-γ, STAT1, APOBEC3G, CD45, and ICAM-1 genes in HIV-1-positive patients with and without DIR.

Methods: Methods: In this study, 30 HIV-1-positive patients (15 patients with and 15 patients without DIR [control group]) were included.

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Article Synopsis
  • SARS-CoV-2 has rapidly mutated, potentially increasing its ability to cause disease and decreasing vaccine effectiveness, highlighting the need for better vaccine designs targeting stable virus regions.* -
  • Researchers analyzed 3369 SARS-CoV-2 genomes to identify conserved immune epitopes, using techniques that combined epitope mutation rates and immunogenicity assessments.* -
  • A two-step method revealed 8 immunodominant regions, 14 epitopes from the immune epitope database, and 10 predicted epitopes that maintain high conservity and immunogenicity, offering a framework for future vaccine development.*
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Despite substantial efforts, no effective treatment has been discovered for severe acute respiratory syndrome-coronavirus 2 (SARS-CoV-2) infection. Therefore, vaccination to reach herd immunity is the ultimate solution to control the coronavirus disease 2019 (COVID-19) pandemic. This study aimed to evaluate the potency, toxicity, and protection of candidate PastoCoAd vaccines as novel mix and match of recombinant adenovirus type 5 (rAd5) containing the full-length spike protein (rAd5-S), rAd5 containing the receptor-binding domain of S protein and nucleoprotein (rAd5 RBD-N), and SOBERANA dimeric RBD protein of SARS-CoV-2.

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Article Synopsis
  • Hepatitis C virus (HCV) can evade the immune system and has developed naturally occurring resistance substitutions (RASs) that complicate treatment with direct acting antivirals (DAAs), which are generally effective but face resistance issues.
  • This study examined 120 patients co-infected with HCV and HIV to identify the prevalence of NS3/4A RASs using PCR and Sanger sequencing techniques.
  • Findings revealed low RAS prevalence (5%) in HCV subtype 1a, but the presence of double and triple mutations suggests the need for testing for mutations before starting DAA treatment, highlighting the importance of further research in larger populations.
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Background: Telomeres through maintaining chromosomal integrity have key roles in the cell life span. The autophagy is typically a pro-survival process and important for maintaining cellular homeostasis. Conversely, in some conditions, autophagy acts as caspase-independent cell death program.

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Article Synopsis
  • The study explores the role of HIV-1 accessory proteins (Nef, Vif, Vpr, and Vpu) as potential vaccine candidates and biomarkers for HIV-1 infection detection.
  • It found that combinations of these proteins led to a stronger immune response in mice, with Nef, Vpu, and Vif showing significant Th1 responses, while Vpr leaned towards Th2 responses.
  • Notably, Vpu emerged as a promising biomarker for distinguishing between treated and untreated HIV-1 infected individuals, suggesting its potential utility in both vaccine development and diagnostic applications.
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Aims And Objectives: In patients infected by HIV-1, some cellular biomarkers such as microRNAs have an important function in the suppression or progression of the disease. The aim of the current study is to evaluate the expression of mir-221, mir-29a, mir-155, and mir-146a in HIV-1 infected patients.

Methods: The miRNAs of 60 HIV-1 infected patients (sample group) and 20 healthy controls (normal group) were extracted from their peripheral mononuclear cells.

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Article Synopsis
  • - The study investigates the potential of four HIV proteins (Tat, Rev, Gp120, p24) as candidates for therapeutic vaccines and diagnostic markers for HIV infection, emphasizing the incomplete effectiveness of current antiretroviral therapy.
  • - Researchers tested the immunogenicity of these proteins in mice and evaluated anti-HIV IgG antibodies in various human groups (naïve, treated, drug-resistant, and healthy controls) to assess their diagnostic value.
  • - Results indicated that anti-Gp120 antibodies were absent in treated individuals, while levels of anti-p24 antibodies were lower in treated subjects compared to naïve ones; these findings suggest the potential of targeting these antibodies in diagnosing HIV infection.
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Objective: This study aimed to simultaneously measure and assess the correlation between the available HIV infection parameters including HIV antibody, p24 Antigen, CD4 cell count, and viral load at the different stages of HIV disease among HIV-positive individuals in Iran.

Materials And Methods: Fifty HIV-positive individuals were classified into three stages (1, 2, and 3) according to the HIV disease stages classification, available in Control of Disease and Prevention (CDC) guideline. 10 ml of the venous blood sample was collected to run the tests for HIV antibody and p24 Ag levels, CD4 cell counts, and viral load.

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Polyethyleneimine (PEI) is a chemical compound that used is as a carrier in gene therapy/delivery. Some studies have investigated the microbicidal potential and antiviral activity (prophylactic or therapeutic) of PEI and its derivatives. The aim of this study was to investigate the effect of branched polyethyleneimine (bPEI) on human immunodeficiency virus (HIV) replication.

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